myExperiment

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James Eales

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KUP titles cytoscape triple graph

Created: 2011-05-20 22:49:34 | Last updated: 2011-05-20 22:50:45

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a cytoscape .cys file that contains the graph discussed in the paper. "An exercise in kidney factomics: From article titles to RDF knowledge base".

File type: Trident (Package)

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Matko BoÅ¡njak

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Datasets for the pack: RCOMM2011 recommender systems...

Created: 2011-05-05 21:18:51 | Last updated: 2011-05-06 12:13:22

Credits: Matko BoÅ¡njak Ninoaf

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Dataset description: items This is a concatenated train and test set from ECML/PKDD Discovery Challenge 2011. Only ID and name attributes were used, other attributes are discarded because of the size of the dataset. This example set represents the content information for each of the items represented by an ID. user_history This is an example set consisting of randomly sampled IDs from items dataset. It represents the user's history - all the items (in this case lectures) he has viewed. u...

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James Eales

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KUP titles triple graph

Created: 2011-04-22 04:50:45 | Last updated: 2011-05-20 16:04:57

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Largest connected component of RDF graph, visualised in Cytoscape, graph laid out using organic layout. Nodes represent unique subjects or objects and are sized by their number of edge connections

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James Eales

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attribute list for article title training data

Created: 2011-04-21 15:40:43

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an html table listing the attributes derived from each title sentence

File type: htm

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James Eales

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Training data for article title classification

Created: 2011-04-21 15:23:53 | Last updated: 2011-04-21 15:24:46

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the training data used for article title classification

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Dr. Sven Van Poucke

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Wound Image Data Mining

Created: 2011-04-17 14:00:45 | Last updated: 2011-05-04 12:35:28

Credits: Dr. Sven Van Poucke

Attributions: Wound Image Data Mining Wound Image Data Mining

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The aim of research behind this file is to discover the way our previously published color-calibration algorithm influences de detection and description of salient points. A recent paper can be found at: http://www.biomedcentral.com/1471-2342/10/7. Other work: Automatic Colorimetric Calibration of Chronic Wound Imaging. S. Van Poucke, Y. Vander Haeghen, K. Vissers, T. Meert, P. G. Jorens BMC Med Imaging. 2010 Mar 18;10:7 Comparative analysis of two methods for wound bed area measur...

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Seroland

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Budget Milestone v.3.7

Created: 2011-04-01 19:59:33 | Last updated: 2011-04-01 19:59:34

Credits: Seroland

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Updated March 31, 2011

File type: Excel workbook

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Paul Fisher

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Human Gene expression data -

Created: 2011-04-01 09:12:28 | Last updated: 2011-04-01 09:12:40

Credits: Saeedeh

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License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list processed for Human gene expression CEL files relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on). The CEL files were analysed using the MADAT Taverna workflow available on myExperiment: http://www.myexperiment.org/workflows/2002.html

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Paul Fisher

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Human Probeset data from Affymetrix

Created: 2011-04-01 09:08:45 | Last updated: 2011-04-01 09:08:51

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list or affymetrix probest identifiers for Human gene expression data relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on)

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Morgan Taschuk

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Drug Target FASTA

Created: 2011-03-30 10:51:26 | Last updated: 2011-04-01 13:10:05

Credits: Morgan Taschuk Andrewsmeaton

Attributions: Compile Protein FASTA from Target to Drug file

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The FASTA file containing the protein sequences of the drug targets from Ondex.

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Paul Fisher

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Taverna XPath practical slides .

Created: 2011-03-30 09:17:52 | Last updated: 2011-03-30 09:17:55

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna training material for using and configuring XPath queries using native XPath Java methods, and XPath Service templates.

File type: PowerPoint presentation

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Paul Fisher

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Taverna Iteration training slides

Created: 2011-03-28 11:44:06 | Last updated: 2011-03-28 11:44:08

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Training slides to outline how to use iterations and iteration strategies in Taverna

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Paul Fisher

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Bonn Taverna Training agenda March/April 2011

Created: 2011-03-28 11:31:38 | Last updated: 2011-03-28 11:31:39

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Agenda of Taverna training

File type: Word document

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Paul Fisher

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Taverna Introduction

Created: 2011-03-28 11:29:08 | Last updated: 2011-03-28 11:29:10

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This powerpoint presentation contains a set of starting exercises for begining your Taverna training.

File type: PowerPoint presentation

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training

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Paul Fisher

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Example XML

Created: 2011-03-23 17:25:09 | Last updated: 2011-03-23 17:25:11

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains some example XML to be used for teaching material and XPath queries

File type: XML

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Paul Fisher

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Schema for flat file cross-referencing

Created: 2011-03-23 17:00:58 | Last updated: 2011-03-23 17:01:01

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This powerpoint slide shows the how data in each flat file can be cross-reference to other flat file data items.

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Paul Fisher

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XML Result from Pubmed Search

Created: 2011-03-23 11:49:33 | Last updated: 2011-03-23 11:49:36

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This xml file conatins results from a pubmed search for 'Blood Clotting'.

File type: XML

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John Brookes

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Simulation results

Created: 2011-03-23 09:52:21 | Last updated: 2011-03-23 09:52:24

Credits: John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Results from the circle drawing functions RTL simulation.

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Paul Fisher

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Bilateral Perisylvian Polymicrogyria - Single Nucleo...

Created: 2011-03-17 11:21:06 | Last updated: 2011-03-17 11:21:12

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of all the SNP found with the Villard et al., (2002) QTL for Bilateral Perisylvian Polymicrogyria. Please download this data as you wish, and use in whatever study you like. The data is open access, and freely available for all to use to help undertand this condition. Genes related to these SNP can be found in the file http://www.myexperiment.org/files/466.

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Paul Fisher

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Bilateral Perisylvian Polymicrogyria

Created: 2011-03-17 10:56:15 | Last updated: 2011-03-17 11:16:53

Credits: Paul Fisher

Attributions: Pathway and Gene to Pubmed Pathways and Gene annotations forQTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of running a QTL workflow for Bilateral Perisylvian Polymicrogyria in human (homo sapiens). Provided are a list of candidate QTL genes (QTg) and their corresponding KEGG pathways. Each gene and pathway have been subsequently run through a series of text mining workflows to determine the significance each may play in relation to Bilateral Perisylvian Polymicrogyria. If you want to help me identify candidate genes for this disorder, please get i...

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bilateral perisylvian polymicrogyria
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cosine vector space
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data integration
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data-driven
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enrichment
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entity recognition
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epilepsy
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gene
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homo sapiens
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human
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Kegg Pathways
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pathways
|
phenotype
|
pubmed
|
qtl
|
quanitative
|
region
|
text mining
|
text mining; term extraction; entity recognition

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David De Roure

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Output from workflow 1943 on 2011-03-13 in CSV format

Created: 2011-03-13 11:31:21

Credits: David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Output from http://www.myexperiment.org/workflows/1943 executed on 2011-03-13

File type: text/csv

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Marie Brown

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Automated Workflows for Accurate Mass-based Putative...

Created: 2011-03-03 15:27:04 | Last updated: 2011-03-03 15:27:07

Credits: Marie Brown

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Three workflows, together defined as PUTMEDID-LCMS, have been developed using the open source Taverna environment to perform putative metabolite identification based on accurate mass data acquired from liquid chromatography-electrospray mass spectrometry instruments. Three workflows perform the following steps. (Step 1) Generation of a list of pairwise peak correlations required for input to workflow 2 (workflow 1) (Step 2) Annotation of features to group different ion types of the same metab...

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John Brookes

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SVN commands for linux

Created: 2011-02-25 13:12:12 | Last updated: 2011-02-25 13:12:13

Credits: John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVN commands for linux - basic operation only

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svn

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Paul Fisher

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Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for RefSeq ids KEGG pathways common to both QTL and microarray based investigations Pathways and Gene annotations for QTL region Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

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