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Example protein list for wikipathways workflow

Created: 2008-09-16 11:40:24

Credits: Thomaskelder

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 136 times | Downloaded: 48 times

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What's On Next (1)

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Queries the BBC to find out what's on next for a particular channel.

Created: 2008-08-28 | Last updated: 2008-08-28

Credits: Sean Bechhofer

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AIDA toolbox

Created: 2008-08-01 11:33:03 | Last updated: 2010-02-14 16:04:25

9 items in this pack

Comments: 0 | Viewed: 243 times | Downloaded: 43 times

BLASTP with simplified results returned (1)

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

Created: 2008-07-22 | Last updated: 2008-07-22

Credits: Franck Tanoh

simple_xcms_pipeline (1)

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A (very) simple demo pipeline that takes an experiment ID, gets the data from the (currently in beta) metware metabolomics datawarehouse and runs XCMS.

Created: 2008-07-14 | Last updated: 2008-07-14

Credits: Markf

metabolic_pathway.xml (1)

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

EBI_CiteXplore (1)

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Perform a literature search using the EBI's CiteXplore service (http://www.ebi.ac.uk/citexplore/), and get the results in a minimal XML format containing the citation information (i.e. title, author, journal, etc.), the identifier of the citation in the source database (PubMed/Medline, Agricola, Patent Abstracts, CBA, CiteSeer, etc.) and information about abstract and full article availablity including URLs.

Created: 2008-07-09

Credits: Hamish McWilliam

countryExammple_unfinished (1)

This Workflow is unfinished, but when connected up, it will allow you to find a list of the cities in a particular country, the time zone that country is in, the conversion rate of that country and yours and the international dialling code for that country

Created: 2008-06-16

Credits: Katy Wolstencroft

getUPIForSequence workflow (2)

Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.

Created: 2008-06-06 | Last updated: 2008-06-06

Credits: Franck Tanoh

EBI_ScanPS (1)

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Perform a Smith-Waterman sequence similarity search using the ScanPS tool (see http://www.compbio.dundee.ac.uk/Software/Scanps/scanps.html). In the case the EBI's WSScanPS web service (see http://www.ebi.ac.uk/Tools/webservices/services/scanps) is used to run the tool. Note: the WSScanPS service used by this workflow was retired 27th January 2010. Equivalent functionality is available in the EBI's FASTA (REST or SOAP) and PSI-Search (REST or SOAP) services.  

Created: 2008-06-03 | Last updated: 2010-12-06

Credits: Hamish McWilliam