This workflow uses one or more services that are deprecated as of 31st December 2012 (almost 12 years ago), and may no longer function. Show details...

Gene to Pathways

Created: 2012-07-09 18:27:21 Last updated: 2012-07-10 08:02:44

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This is a Taverna workflow that given a gene ID fetches the corespondondings pathways. To do so, the workflow make use of two KEGG web services.

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Inputs (0)

Processors (3)

Name	Type	Description
get_enzymes_by_gene	wsdl	Wsdl http://soap.genome.jp/KEGG.wsdl Wsdl Operation get_enzymes_by_gene
get_pathways_by_enzymes	wsdl	Wsdl http://soap.genome.jp/KEGG.wsdl Wsdl Operation get_pathways_by_enzymes
Gene_Value_Constant	stringconstant	Value eco:b0002

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Outputs (1)

Name	Description
Pathways

Datalinks (3)

Source	Sink
Gene_Value_Constant:value	get_enzymes_by_gene:genes_id
get_enzymes_by_gene:return	get_pathways_by_enzymes:enzyme_id_list
get_pathways_by_enzymes:return	Pathways

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Information Workflow Type

Taverna 2

Information Uploader

Khalid Belhajjame

Information License

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Information Version 1 (of 1)

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Khalid Belhajjame

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Information Featured In Packs (1)

Gene_To_Pathway using Taverna and Vistrails

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Information Statistics

821 viewings

709 downloads

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Gene to Pathways

Created by Khalid Belhajjame on Monday 09 July 2012 18:27:21 (UTC)

Last edited by Khalid Belhajjame on Tuesday 10 July 2012 08:02:43 (UTC)

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"This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings."This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings.

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Gene to Pathways

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Other workflows that use similar services (93)