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Uploader
Avatar Gb Robert Muetzelfeldt
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Blob Systo diagram widget

Created: 2013-09-02 23:05:28 | Last updated: 2013-09-18 20:27:41

Credits: User Robert Muetzelfeldt

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test - Systo diagram widgetSee http://www.systo.org to find out more about Systo.

File type: JavaScript

Comments: 0 | Viewed: 14 times | Downloaded: 10 times

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Uploader
Avatar Gb Robert Muetzelfeldt
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Blob Miniworld model as a Javascript object literal

Created: 2013-09-02 22:59:00 | Last updated: 2013-09-02 22:59:26

Credits: User Robert Muetzelfeldt

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Miniworld model

File type: JavaScript

Comments: 0 | Viewed: 18 times | Downloaded: 12 times

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Creator
4185?size=60x60 Nl Eleni
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Pack HD data interpretation


Created: 2013-09-02 13:18:22 | Last updated: 2015-04-03 21:14:41

This workflow pack, was created in order to further analyse and interpret the results from workflow pack 485 (HD chromatin analysis). The workflows in this pack are using the anni web services, implemented by the Biosemantics group. 

6 items in this pack

Comments: 0 | Viewed: 88 times | Downloaded: 17 times

Tags:
Taverna 2
Uploader
4185?size=60x60 Nl Eleni

Workflow Get concept suggestions from term (1)

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This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example "human", "htt", "Transcription" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows.

Created: 2013-08-31

Credits: User Eleni Network-member BioSemantics

Uploader
4185?size=60x60 Nl Eleni
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Blob workflow sketch Hd chromatin analysis

Created: 2013-08-30 12:01:45 | Last updated: 2013-11-04 19:18:11

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Sketch that demonstrates how the workflows of our chromatin analysis in HD are connected with each other, plus a short explanation for each one. 

File type: PNG image

Comments: 0 | Viewed: 33 times | Downloaded: 23 times

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Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob Nested UnigeneID_to_KEGG in Import and Convert

Created: 2013-08-29 14:09:53

Credits: User Katy Wolstencroft User Alan Williams User Paul Fisher

Attributions: Workflow UnigeneID to KEGG Pathways

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example of a nested workflow, created for the training purposes.

File type: Trident (Package)

Comments: 0 | Viewed: 31 times | Downloaded: 15 times

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Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob GalaxyGeneList - long : datafile for training

Created: 2013-08-29 10:25:07

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Chip-Seq gene list example used for training purposes. This is the original version of the file  (approx 400 entries). Warning! Running this file in some workflows may  take up to 30 minutes! If you want to use it for training, you may want to reconsider and use the shorter version of the file which is also uploaded.

File type: Excel workbook

Comments: 0 | Viewed: 30 times | Downloaded: 16 times

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Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob GalaxyGeneList - short : datafile for training

Created: 2013-08-29 10:20:47 | Last updated: 2013-08-29 10:22:02

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Chip-Seq gene list example used for training purposes. This is a shorter version of the file (20 entries) as running the original file (the longer one with approx 400 entries) takes up to 30 minutes.

File type: Excel workbook

Comments: 0 | Viewed: 53 times | Downloaded: 95 times

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Creator
4185?size=60x60 Nl Eleni
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Pack HD chromatin analysis


Created: 2013-08-28 12:17:37 | Last updated: 2016-10-28 15:02:27

This pack is comprised by all workflows used for the integration and the analysis of Huntington's Disease (HD) gene expression data and epigenetic datasets in order to establish links between HD and epigenetic regulation in disease.  

6 items in this pack

Comments: 0 | Viewed: 83 times | Downloaded: 18 times

Tags:
Taverna 2
Uploader
Avatar De Sonja Holl

Workflow EBI NCBI BLAST filter e-value and length (1)

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The workflow queries the NCBI BLAST web service and extracts the e-values and length of the results. One of the sub-workflows filters the length first and afterwards the e-value and the other sub-workflow filters first the e-value and then the length. As the result may be different, this workflow was used for optimization purposes to find the sub-workflow performing best.

Created: 2013-08-23 | Last updated: 2014-02-06

Credits: User Sonja Holl

Attributions: Workflow EBI_NCBI_BLAST

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