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RShell tutorial

Created: 2013-09-05 09:46:43

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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BioVeL workshop reduced full workflow (1)

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The workflow is a reduced version of the main workflow. It can be used to call web services to support biodiversity research. It fetches data from GBIF. The occurrences are then used to create a model using OpenModeller, test the model and to project the model. The projection of the model is currently a "native projection" i.e. it uses the same layers as those used to create the model. The services within the workflow will allow non-native projections

Created: 2013-09-04

Credits: Katy Wolstencroft Alan Williams

Attributions:

Convert Taverna list of RExpr to R list - v2 (2)

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This workflow accepts a Taverna list of arbitrary R expressions and returns a single R expression representing an R list containing the original expressions. This workflow relies on the current Taverna behaviour of an R expression being represented by a list of strings containing the deparsed expression. If this changes, this workflow will likely break. The first BeanShell converts each R expression (actually a list of strings) to a single string. This uses implicit iteration to do this for...

Created: 2013-09-04 | Last updated: 2013-10-14

Credits: Jon Giddy BioVeL

Hello World (1)

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One of the simplest workflows possible, outputting the String Constant "Hello world!"One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2013-09-04

Credits: Raul Palma

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myPack

Created: 2013-09-04 10:57:02 | Last updated: 2013-09-04 11:06:30

2 items in this pack

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Introduction to Taverna -part2 - Bonn 2013

Created: 2013-09-03 22:28:51

Credits: Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Pathway to Pubmed (1)

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This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2013-09-03

Credits: Alan Williams Paul Fisher

Attributions: Pathway to Pubmed

UnigeneID to KEGG Pathways (1)

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This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2013-09-03

Credits: Katy Wolstencroft Alan Williams Paul Fisher

Attributions: NCBI Gi to Kegg Pathways

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Introduction to Taverna - Bonn 2013

Created: 2013-09-03 20:22:55

Credits: Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Empty profile

Created: 2013-09-03 10:04:03 | Last updated: 2015-02-03 12:07:53

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

File type: Taverna Component Profile

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