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pubmed abstracts from pathways (1)

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Extraction of the abstracts from pubmed pubblications related to the pathways involving the input genes

Created: 2014-02-28

Credits: Massimo La Rosa Antonino Fiannaca

Attributions: NCBI Gi to Kegg Pathway Descriptions Pathway to Pubmed

NGS : Filter contamination in raw reads by ID (1)

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Filter FastQ sequences by ID

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Bowtie2 using built-in genome to dep... (1)

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Reads mapping using a built-in genome from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Bowtie2 with a genome in fasta forma... (1)

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Reads mapping using a reference genome in fasta format from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Coverage determination and visualiza... (1)

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From a BAM file and a reference genome fasta file, calculate the depth of coverage and generate pileup, interval, Base coverage as Summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : flanking SNP regions (1)

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Flank SNP regions using interval format file and a fasta reference file

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

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Setup instructions for BioLinux updated

Created: 2014-02-27 18:14:25

Credits: Tim Booth Norman Morrison Francisco Quevedo

Attributions: Setup instructions for BioLinux VM

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: OpenDocument Text

Comments: 0 | Viewed: 18 times | Downloaded: 8 times

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Population genomics : From Blast xml forma... (1)

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Parse Blast XML results to obtain species specifics sequences

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: Ylebras

NGS : RNA-seq differential expression anal... (1)

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Analyse paired-end RNA-seq reads of 2 different individuals with FastQC, Tophat2, Cufflinks and Cuffdiff using a reference annotation in gtf format

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Filtrer fastq reads with N (1)

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Filter FastQ file and delete sequences with N

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: Ylebras