All content

NGS : RNAseq workflow part 1 from Tophat t... (1)

• Download

Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras

View Download

Astronomy Taverna 2.5 starter pack

Created: 2014-03-03 17:02:08 | Last updated: 2014-03-03 17:16:57

45 items in this pack

Comments: 0 | Viewed: 96 times | Downloaded: 26 times

View Download

LOGS

Created: 2014-03-02 22:34:21 | Last updated: 2014-04-18 00:54:19

Credits: cecilia Amaya

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Comments: 0 | Viewed: 56 times | Downloaded: 19 times

This File has no tags!

NGS : Mini assembly from FastQ files using... (1)

• Download

Assemble FastQ reads with minia

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

pubmed abstracts from pathways (1)

• Download

Extraction of the abstracts from pubmed pubblications related to the pathways involving the input genes

Created: 2014-02-28

Credits: Massimo La Rosa Antonino Fiannaca

Attributions: NCBI Gi to Kegg Pathway Descriptions Pathway to Pubmed

NGS : Filter contamination in raw reads by ID (1)

• Download

Filter FastQ sequences by ID

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Bowtie2 using built-in genome to dep... (1)

• Download

Reads mapping using a built-in genome from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Bowtie2 with a genome in fasta forma... (1)

• Download

Reads mapping using a reference genome in fasta format from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Coverage determination and visualiza... (1)

• Download

From a BAM file and a reference genome fasta file, calculate the depth of coverage and generate pileup, interval, Base coverage as Summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras

NGS : flanking SNP regions (1)

• Download

Flank SNP regions using interval format file and a fasta reference file

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras