All content

NGS : Group and filter mapped reads (1)

• Download

Filter and group reads from a mapping Bam file

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

Tuto Galaxy 2013 : GenOuest, from Fasta to... (1)

• Download

Create a tree from a multifastafile using ClustalW, PhylipDNAdist, PhylipNeighbor, PhylipDrawtree and Treevector, for interactive visualization in Phyloviz or static on pdf or svg format. Then, using the same multifasta file, handling sequences file, use blast on a reference genome and filter results to have sequences with more than 90% identity.

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Tuto SNP detection workflow single end (1)

• Download

Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras

Transcritomics : eQTL after data extractio... (1)

• Download

Format raw files from Feature extraction output (Agilent array matrix file) to have individual in columns and genes in rows

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras

ToMaR HDFS Input Directory Processing (2)

• Download

This workflow allows processing an HDFS input directory using ToMaR. The "hdfs_working_dir" input port is the HDFS input directory which containes the data to be processed by ToMaR. The "toolspec" input port contains the toolspec XML describing operations that can be used (see "operation" input port). The "operation" input port defines the operation to be used in the current ToMaR job execution (see "toolspec" input port, an operation port used here must be defined in the tool specificatio...

Created: 2014-03-04 | Last updated: 2014-03-11

Credits: Sven

NGS : RNAseq workflow part 1 from Tophat t... (1)

• Download

Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras

View Download

Astronomy Taverna 2.5 starter pack

Created: 2014-03-03 17:02:08 | Last updated: 2014-03-03 17:16:57

45 items in this pack

Comments: 0 | Viewed: 89 times | Downloaded: 21 times

View Download

LOGS

Created: 2014-03-02 22:34:21 | Last updated: 2014-04-18 00:54:19

Credits: cecilia Amaya

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Comments: 0 | Viewed: 51 times | Downloaded: 12 times

This File has no tags!

NGS : Mini assembly from FastQ files using... (1)

• Download

Assemble FastQ reads with minia

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: Ylebras