pubmed abstracts from pathways

Created: 2014-02-28 11:08:41

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Extraction of the abstracts from pubmed pubblications related to the pathways involving the input genes

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Processors (3)

Name	Type	Description
Workflow6	workflow
get_references_by_pathway	wsdl	Wsdl http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl Wsdl Operation fetchBatch
Retrieve_Abstracts	workflow

Beanshells (2)

Name	Description	Inputs	Outputs
split_pathway_ids		input	output
add_unigene_to_string		input	output

Outputs (0)

Datalinks (2)

Source	Sink
Workflow6:pathway_id	get_references_by_pathway:ids
get_references_by_pathway:fetchBatchReturn	Retrieve_Abstracts:pubmed_ids

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Taverna 2

Information Uploader

Massimo La Rosa

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1197 viewings

640 downloads

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pubmed abstracts from pathways

Created by Massimo La Rosa on Friday 28 February 2014 11:08:38 (UTC)

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This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...

Created: 2008-09-22

Credits: Steffen MÃ¶ller

pubmed abstracts from pathways

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Other workflows that use similar services (9)