NGS : Mini assembly from FastQ files using Minia, summary statistics and visualization of output contigs
Created: 2014-02-28 11:14:31
Last updated: 2014-06-10 09:06:55
Assemble FastQ reads with minia
Preview
Import
Not currently available.
Workflow Components
Inputs (2)
Name |
Description |
FastQ file |
|
cond |
runtime parameter for tool Filter |
Steps (10)
Name |
Tool |
Description |
Input dataset |
None |
|
FASTQ to FASTA |
toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0 |
|
Minia |
Minia |
|
FASTA-to-Tabular |
fasta2tab |
|
Combine FASTA and QUAL |
fastq_combiner |
|
Convert |
Convert characters1 |
|
Summary Statistics |
Summary_Statistics1 |
|
Filter |
testtoolshed.g2.bx.psu.edu/repos/greg/gregs_filter/Filter1/3.3.0 |
|
Summary Statistics |
Summary_Statistics1 |
|
Histogram |
histogram_rpy |
|
Outputs (9)
Name |
Type |
output |
fasta |
test |
input |
output |
tabular |
output_file |
fastqsanger |
out_file1 |
tabular |
out_file1 |
tabular |
out_file1 |
input |
out_file1 |
tabular |
out_file1 |
png |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (1)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (0)
(Workflows/Files)
None
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(0)
There are no workflows in myExperiment that use similar services to this Workflow.
Comments (0)
No comments yet
Log in to make a comment