Workflows

RAWverna Image evaluation - Read Image (RAW) (1)

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Reads an image from the given path using dcraw for image comparison.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read images (R... (1)

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Reads images for evaluation by RAWverna. The read parameters depend on the type of the images.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Get image mimetype (1)

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Returns the mimetype of an image.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Convert by target path (1)

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Converts a file to a target format depending on the target path extension.

Created: 2012-02-21 | Last updated: 2012-08-14

Credits: Markus Plangg

Get a list of Protein Identification exper... (3)

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Get a list of Protein Identification experiments from PRIDE by a Gene Ontology query

Created: 2012-02-21 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Parse QuickGO "proteinList" file format (2)

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Parse QuickGO "proteinList" file format. http://www.ebi.ac.uk/QuickGO/reference.html

Created: 2012-02-20 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

WCP-04 Exclusive choice - if/else branching (1)

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The choice of executing choiceA or choiceB is determined by using String_List_Intersection and String_List_Difference. If in="true" then the intersection will yield a non-empty list, triggering execution of choiceA. This list will however not differ from the input, and so choiceB will iterate over an empty list (ie. not execute). Note how using 'difference' for the else-case here means that if you run the workflow with in="bob", choiceB would still run. Some early if/el...

Created: 2012-02-20 | Last updated: 2012-02-20

Credits: Stian Soiland-Reyes

Attributions: Example of a conditional execution workflow Example of conditional invocation

Get a list of proteins from a Gene Ontolog... (1)

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Get a list of UniProt proteins that have been annotated with the same Gene Ontology (GO) term. This workflow uses the the QuickGO service

Created: 2012-02-20 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

Run a Workflow on Taverna Server (local t2... (1)

Uses a local t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-20

Credits: Anja Le Blanc

Attributions: Run a Workflow on Taverna Server

Run a Workflow on Taverna Server (1)

Uses the URL to a t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-17 | Last updated: 2012-02-17

Credits: Anja Le Blanc