Get a list of Protein Identification experiments from PRIDE by a Gene Ontology query

Created: 2012-02-21 00:30:44 Last updated: 2013-07-10 14:32:03

Option 1:

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
TaxonomyId	Taxonomy ID used to describe Species. Search for a taxonomy ID in "www.uniprot.org/browse/taxonomy". Set a value with empty content to search for all the species.
GeneOntologyId	Gene Ontology Id

Processors (4)

Name	Type	Description
Get_a_list_of_proteins_from_a_Gene_Ontology__GO__term	workflow
header_value	stringconstant	Value true
Find_protein_identifications_in_PRIDE	workflow
Parse_QuickGO__proteinList__file_format_2	workflow

Beanshells (2)

Name	Description	Inputs	Outputs
processQuickGoProteinListFormat		quickGoProteinListFormat header	idList synonymList typeList taxonList nameList symbolList dbList test
createTsvSummary		PsiModificationName SpectrumLink TissueName ExperimentTitle SpecieName ModificationLocation Celltype SubmittedProteinAccession PeptideSequence ExperimentAccession ProteinAccession	summary

Outputs (2)

Name	Description
PRIDE_SUMMARY	Protein identification summary from PRIDE
proteinListFromGO

Datalinks (7)

Source	Sink
TaxonomyId	Get_a_list_of_proteins_from_a_Gene_Ontology__GO__term:TaxonomyId
GeneOntologyId	Get_a_list_of_proteins_from_a_Gene_Ontology__GO__term:GeneOntologyId
Parse_QuickGO__proteinList__file_format_2:idList	Find_protein_identifications_in_PRIDE:ProteinAccession
header_value:value	Parse_QuickGO__proteinList__file_format_2:header
Get_a_list_of_proteins_from_a_Gene_Ontology__GO__term:listOfProteins	Parse_QuickGO__proteinList__file_format_2:quickGoProteinListFormat
Find_protein_identifications_in_PRIDE:SUMMARY	PRIDE_SUMMARY
Parse_QuickGO__proteinList__file_format_2:idList	proteinListFromGO