Workflows

A Talend mashup to discover PARP proteins ... (3)

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A Talend workflow to answer this specific question :What is known about PARP family proteins involved in pathway according to Reactome ?by fetching RDF data from Bio2RDF`s HGNC, UniProt REST service and EBI Reactome SPARQL endpoint, all Semantic Web public resources.

Created: 2014-02-10 | Last updated: 2014-04-07

Credits: Francois Belleau

RTCalc Retention Time Prediction and Outli... (1)

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This workflow takes as input a pepXML file from PeptideProphet, applied RTCalc and outputs a filtered list of peptides based on the retention time Z-scores.

Created: 2014-02-06 | Last updated: 2014-02-06

Credits: Magnus Palmblad Sonja Holl

PhotoHawk - SSIM (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using SSIM metric (http://purl.org/DP/quality/measures#15).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - AE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using AE metric (http://purl.org/DP/quality/measures#4).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - MAE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MAE metric (http://purl.org/DP/quality/measures#5).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - MSE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MSE metric (http://purl.org/DP/quality/measures#6).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - PAE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using PAE metric (http://purl.org/DP/quality/measures#7).

Created: 2014-02-05

Credits: Artur Kulmukhametov

Test interaction page in myExperiment (9)

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This workflow demonstrates the feasibility of storing interaction pages in myExperiment

Created: 2014-02-04 | Last updated: 2014-02-06

Credits: Jon Giddy

Entrez Gene to KEGG Pathway (1)

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This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

Created: 2014-01-30

Credits: Alice Heliou

setp2 (1)

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Traduction test

Created: 2014-01-30 | Last updated: 2014-01-30

Credits: Alice Heliou

SimpleTest (1)

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This is a simple test workflow. It has only one node that takes an input (a string) and return a string of the form processed(input).

Created: 2014-01-28 | Last updated: 2014-01-28

Credits: Gab

Empty list output (1)

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Simply returns a single port, depth 1, with nothing in it.

Created: 2014-01-24

Credits: Robert Haines Alan Williams

Empty list output and a value (1)

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Simply returns a port, depth 1, with nothing in it and a port, depth 0, with a constant.

Created: 2014-01-24

Credits: Robert Haines Alan Williams

PDF Read (1)

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Read a PDF from a URL

Created: 2014-01-24

Credits: Robert Haines Alan Williams

P15409 (1)

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worflow to demostrate how to use Taverna with service anel or catalogue

Created: 2014-01-22

Credits: Lilly Hueber

Taverna Workflow -1 (1)

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P15409

Created: 2014-01-22

Credits: Zoe Ward

Test (1)

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A Simple work flow to gain experiance in using Tavern

Created: 2014-01-22

Credits: Gregory Prescott Anthony A Numan Uddin Joanne Stonehouse Cranfield Course - January 2014

simple fasta workflow (1)

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workflow using services

Created: 2014-01-22

Credits: Ruth Eberhardt Aleksandra Pawlik

Simple FASTA workflow (1)

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A simple Taverna workflo

Created: 2014-01-22

Credits: Aleksandra Pawlik Katy Wolstencroft Alan Williams

Test sharing 2 (1)

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bla,bla

Created: 2014-01-16

Credits: quevedo79 Francisco Quevedo

BiomartAndEMBOSSAnalysis (1)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2014-01-14

Credits: al basyid basyid

Average solar wind speed at ACE (1)

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This routine returns the average solar wind speed from ACE data given an input time interval.

Created: 2014-01-13

Credits: Eoincar

CME froward propagation (1)

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Ballistic propagation of CME is the SHEBA propagation model. CME speed and speed error produces an estimated time of arrival at desired location.Constructed by David Perez Suarez.

Created: 2014-01-13

Credits: Eoincar

Produce time interval from single time (1)

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Produce a time interval from a single input time.

Created: 2014-01-13

Credits: Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, and an SQL condition on the query.

Created: 2014-01-13

Credits: Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, the desired parameter, parameter to order by, and limit on the search result.

Created: 2014-01-13

Credits: Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end and desired paramter(s).

Created: 2014-01-13

Credits: Eoincar

Workflow of IFC data collection, crowd mod... (3)

Simulation workflow for crowd modeling in building. It combines all the components needed for crowd simulation (CAD/BIM data collection, crowd modeling, crowd simulation and 3D visualization). This version cannot be executed as is due to local tools dependancies (the components in yellow). The lattest version is available in http://www.myexperiment.org/workflows/4247.html.

Created: 2013-12-18 | Last updated: 2014-06-24

JSTWebDav3Input (3)

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Some Broken

Created: 2013-12-11 | Last updated: 2013-12-17

ONB Web Archive Fits Characterisation usin... (2)

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Hadoop based workflow for applying FITS on the files contained in ARC web archive container files and ingest the FITS output in a MongoDB using C3PO. Dependencies: - Spacip (https://github.com/shsdev/spacip) - Tomar (https://github.com/openplanets/tomar) - C3PO (https://github.com/peshkira/c3po) Parameters: - hdfs_input_path: Path to a directory which contains textfile(s) with absolute HDFS paths to ARC files - num_files_per_invokation: Number of items to be processed per invokation - fits...

Created: 2013-12-09 | Last updated: 2013-12-10

Credits: Sven

Extract_citations (3)

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Corrected XPath

Created: 2013-12-09 | Last updated: 2013-12-09

Extract_positions (2)

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Changed output port name

Created: 2013-12-01 | Last updated: 2013-12-01

Extract_data_providers (2)

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Changed output port name

Created: 2013-12-01 | Last updated: 2013-12-01

PostgresSQL/PostGIS Database for Historians (1)

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This diagram depicts the steps that the 'Mapping the Jewish Communities of the Byzantine Empire' project took to populate the project's PostgreSQL/PostGIS database. 

Created: 2013-11-27 | Last updated: 2013-11-27

Credits: Gethin Rees