setp2

Created: 2014-01-30 13:59:13 Last updated: 2014-01-30 13:59:50

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Traduction test

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Workflow Components

Inputs (0)

Processors (11)

Name	Type	Description
query	stringconstant
style	stringconstant
format	stringconstant
parametersXML	local
transeqXML	local
runAndWaitFor_param	local
sequenceXML	local
transeqResultXML	local
fetchData	arbitrarywsdl
runAndWaitFor	arbitrarywsdl
Merge_string_list_to_string	local

Beanshells (0)

Outputs (5)

Name	Description
result_sequence
nucle_sequence
debug_trans_report
debug_detail_status
debug_file

Links (15)

Source	Sink
Merge_string_list_to_string:concatenated	sequenceXML:sequence_direct_data
Merge_string_list_to_string:concatenated	debug_file
fetchData:fetchDataReturn	Merge_string_list_to_string:stringlist
fetchData:fetchDataReturn	nucle_sequence
format:value	fetchData:format
parametersXML:transeqResult	transeqResultXML:input
query:value	fetchData:query
runAndWaitFor:parameters	parametersXML:input
runAndWaitFor_param:output	runAndWaitFor:parameters
sequenceXML:output	transeqXML:sequence
style:value	fetchData:style
transeqXML:output	runAndWaitFor_param:transeq
transeqResultXML:detailed_status	debug_detail_status
transeqResultXML:outseq	result_sequence
transeqResultXML:report	debug_trans_report

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Information Workflow Type

Taverna 1

Information Uploader

Alice Heliou

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

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Alice Heliou

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Information Statistics

602 viewings

597 downloads

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Citations (0)

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Version History

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setp2

Created by Alice Heliou on Thursday 30 January 2014 13:59:13 (UTC)

Last edited by Alice Heliou on Thursday 30 January 2014 13:59:49 (UTC)

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This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...

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Credits: Steffen MÃ¶ller