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Showing 2916 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
3772?size=60x60 Nl Kristina Hettne

Workflow chebi2keggID (1)

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This workflow converts a (list of) chebi identifiers to kegg compound identifiers.

Created: 2016-06-21

Credits: User Kristina Hettne

Taverna 2
Uploader
Avatar Nl Davy Cats

Workflow GOgetter (no merge) (1)

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Retrieves all GO terms (with experimental evidence) associated with the given genelist. The GO terms are returned in a list per gene.

Created: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow Get from a Pathway the Go fucntion from Kegg (1)

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This workflow gets from a Pathway nr the Go term from the Kegg database and then looks up the go function in the AMIGO database.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Attributions: Workflow get the function of Go terms.

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow get the function of Go terms. (1)

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This workflow uses the AMIGO database to get functions descriptions for Go terms.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow Finding gene difference in pathways betwee... (1)

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Looks up the all the genes in pathways with the Kegg database between to different organismes.

Created: 2016-06-10

Credits: User Tom Rosman

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow pathway difference in ortholog genes (1)

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This workflow looks at a set of human genes and search for the orthologs of mouse and rat. Then it gets for all the genes the pathways linked to it in Kegg and search for difference in them.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Taverna 2
Uploader
Avatar Nl Davy Cats

Workflow GOgetter (2)

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Retrieves all GO terms with experimental evidence associated with the given genelist. A GO term may apear multiple times in the resulting list if it is associated with multiple genes.

Created: 2016-06-10 | Last updated: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 3-3 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-4 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-3 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow Author Publications and Citations by Year ... (1)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional JSONPath is here used to only look up citing articles for cited work...

Created: 2016-05-09

Credits: User Magnus Palmblad

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow Author Publications and Citations by Year ... (2)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional XPath is here used to only look up citing articles for cited work, i...

Created: 2016-05-09 | Last updated: 2016-05-09

Credits: User Magnus Palmblad

KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocol 6 (1)

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This workflow contains protocol 6 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime and the IUPHAR/BPS Guide to Pharmacology data file available from http://guidetopharmacology.org/DATA/interactions.csv.The workflow returns targe...

Created: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocol 5 (1)

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This workflow contains protocol 5 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.This workflow shows compounds which are found both in an assay of interest (upper part of the workflow) and in kinase assays (lower part of the w...

Created: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocols... (1)

This workflow contains protocols 1-4 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.Starting with a list of compound URIs (here retrieved in the metanode Protocol 0), the workflow returns ChEBI classifications for the compound...

Created: 2016-05-06 | Last updated: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

Taverna 2
Uploader
4374?size=60x60 Co Juan Felipe Muñoz Fernández

Workflow ASTM D2216-10 - Preliminary Workflow (1)

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ASTM D2216-10: Standard Test Methods forLaboratory Determination of Water (Moisture) Content ofSoil and Rock by Mass

Created: 2016-04-25

Credits: User Juan Felipe Muñoz Fernández

Taverna 2
Uploader
4374?size=60x60 Co Juan Felipe Muñoz Fernández

Workflow ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: User Juan Felipe Muñoz Fernández

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow Comportamiento de los metales trazas Cu, P... (1)

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The concentrations of the metalsCu, Pb, Mn and Zn in fra ctions geochemistry insix sediment core of the lagoon Unare, Venezuela.A procedure of sequential extraction of metalswas determined, for each fraction was usedreagents different and conditions of digestionand the concentrations of metals determinedwith spectrophotometer of Atomic Absorption.The fractionating of metals indicated an order ofdecreasing concentration as it follows: residualfraction > organic/sulfur matter > carbonates...

Created: 2016-03-19

Credits: User William Senior

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow Coastal and Marine Water Quality Indicator... (1)

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The Workshop “Coastal and Marine Water Quality Indicators and Methodologies to DeterminePollutant Loads in the Wider Caribbean” took place in Havana, Cuba, with the following objectives:? Analyse methodologies used to determine pollutant loads in the marine environment from pointand non-point sources and the main coastal and marine water quality indicators.? Discuss methodologies used for the characterization and quantification of municipal andindustrial solid wastes.? Present pre...

Created: 2016-03-19

Credits: User William Senior

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El Manzanares es uno de los principales ríos de Venezuela. Está ubicado en la región nor-oriental del país.

Created: 2016-03-19

Credits: User William Senior

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El río Manzanares es uno de los más importantes de Venezuela. Está ubicado en la región nor-oriental,en el Estado Sucre. Posee una cota máxima de 2.200,oo msnm, en el Cerro Las Peonias y una mínimade 00,oo msnm en el Golfo de Cariaco, con una longitud de cauce de 81 km, pendiente mínima de 15%y gasto medio de 1,23 m3/s. Existe una precipitación media anual de 1.328,10 mm, con evaporación de1.929,4 mm (MARNR, 1998). Según el...

Created: 2016-03-19

Credits: User William Senior

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow Phytobenthos and macrophytes of the Manzan... (1)

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A phytobenthos and macrophytes checklist was carried at the Manzanaresriver basin, Sucre state, Venezuela, from November 2003 to July 2005. Collectwas accomplished manually and material was examined with a stereoscopicloupe and a microscope. With artificial key aid, 21 phytobenthos andmacrophytes species: 4 Cyanophyta, 9 Chlorophyta, 1 Heterokontophyta, 2Rhodophyta, 3 Bryophyta and 2 Magnoliophyta were identified. The basin lowersof the Manzanares presented the higher species number, being th...

Created: 2016-03-19

Credits: User William Senior

PDF
Uploader
4367?size=60x60 Ve William Senior

Workflow NIVELES DE METALES PESADOS EN SEDIMENTOS S... (1)

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To evaluate the water quality along the continental shoresof Venezuela, where fishing communities exploit the clam Tivelamactroides, the concentration of heavy metals (Cu, Mn, Fe, Zn,Cd, Ni, Pb y Cr) was determined in superficial sediments,together with environmental factors (temperature, salinity,dissolved O2, pH, phytoplanctonic biomass, seston, and total Nand P) of the litoral waters of Playa Güiria on the northeasterncoast (Sucre State), and of Río Chico and Boca de Paparo (Mi...

Created: 2016-03-19

Credits: User William Senior

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