get the function of Go terms.
Created: 2016-06-10 08:42:32
This workflow uses the AMIGO database to get functions descriptions for Go terms.
Preview
Run
Run this Workflow in the Taverna Workbench...
Workflow Components
Authors (1)
Titles (1)
get the function of Go terms. |
Descriptions (1)
This workflow uses the AMIGO database to get functions descriptions for Go terms. |
Dependencies (0)
Inputs (1)
Name |
Description |
id |
ID input: Go Term
|
Processors (6)
Name |
Type |
Description |
REST_Service |
rest |
|
Split_on_enter |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = "\n";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
Filter_list_of_strings_extracting_match_to_a_regex |
localworker |
Scriptimport java.util.regex.*;
filteredlist = new ArrayList();
Pattern thePat = Pattern.compile(regex);
int theGroup = Integer.parseInt(group);
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
Matcher matcher = thePat.matcher(item);
if (matcher.find()) {
filteredlist.add(matcher.group(theGroup));
}
}
|
Text_regex |
stringconstant |
Value.* |
Text_group |
stringconstant |
Value0 |
split_string |
beanshell |
ScriptString[] split = in1.split("\"");
String out1 = split[1];
|
Beanshells (1)
Name |
Description |
Inputs |
Outputs |
split_string |
|
in1
|
out1
|
Outputs (1)
Name |
Description |
go_pathway |
|
Datalinks (7)
Source |
Sink |
Split_on_enter:split |
REST_Service:id |
id |
Split_on_enter:string |
REST_Service:responseBody |
Filter_list_of_strings_extracting_match_to_a_regex:stringlist |
Text_regex:value |
Filter_list_of_strings_extracting_match_to_a_regex:regex |
Text_group:value |
Filter_list_of_strings_extracting_match_to_a_regex:group |
Filter_list_of_strings_extracting_match_to_a_regex:filteredlist |
split_string:in1 |
split_string:out1 |
go_pathway |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (2)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (1)
(Workflows/Files)
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(0)
There are no workflows in myExperiment that use similar services to this Workflow.
Comments (0)
No comments yet
Log in to make a comment