chebi2keggID
Created: 2016-06-21 17:33:34
This workflow converts a (list of) chebi identifiers to kegg compound identifiers.
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Authors (1)
Titles (1)
Descriptions (1)
This workflow converts a (list of) chebi identifiers to kegg compound identifiers. |
Dependencies (0)
Inputs (1)
Name |
Description |
chebi_id |
ChEBI identifiers separated by tab.
|
Processors (4)
Name |
Type |
Description |
chebi2kegg |
rest |
REST service to map a ChEBI identifier to a KEGG identifier. |
Split_string_into_string_list_by_regular_expression |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
regex_value |
stringconstant |
Value\t |
Merge_String_List_to_a_String |
localworker |
ScriptString seperatorString = "\n";
if (seperator != void) {
seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
sb.append(item);
if (i.hasNext()) {
sb.append(seperatorString);
}
}
concatenated = sb.toString();
|
Outputs (1)
Name |
Description |
ids_file |
A mapping between the input ChEBI ids and the KEGG compound ids.
|
Datalinks (5)
Source |
Sink |
Split_string_into_string_list_by_regular_expression:split |
chebi2kegg: |
regex_value:value |
Split_string_into_string_list_by_regular_expression:regex |
chebi_id |
Split_string_into_string_list_by_regular_expression:string |
chebi2kegg:responseBody |
Merge_String_List_to_a_String:stringlist |
Merge_String_List_to_a_String:concatenated |
ids_file |
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Version 1
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