Workflows

Coastal and Marine Water Quality Indicator... (1)

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The Workshop “Coastal and Marine Water Quality Indicators and Methodologies to DeterminePollutant Loads in the Wider Caribbean” took place in Havana, Cuba, with the following objectives:? Analyse methodologies used to determine pollutant loads in the marine environment from pointand non-point sources and the main coastal and marine water quality indicators.? Discuss methodologies used for the characterization and quantification of municipal andindustrial solid wastes.? Present pre...

Created: 2016-03-19

Credits: William Senior

PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El Manzanares es uno de los principales ríos de Venezuela. Está ubicado en la región nor-oriental del país.

Created: 2016-03-19

Credits: William Senior

PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El río Manzanares es uno de los más importantes de Venezuela. Está ubicado en la región nor-oriental,en el Estado Sucre. Posee una cota máxima de 2.200,oo msnm, en el Cerro Las Peonias y una mínimade 00,oo msnm en el Golfo de Cariaco, con una longitud de cauce de 81 km, pendiente mínima de 15%y gasto medio de 1,23 m3/s. Existe una precipitación media anual de 1.328,10 mm, con evaporación de1.929,4 mm (MARNR, 1998). Según el...

Created: 2016-03-19

Credits: William Senior

Phytobenthos and macrophytes of the Manzan... (1)

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A phytobenthos and macrophytes checklist was carried at the Manzanaresriver basin, Sucre state, Venezuela, from November 2003 to July 2005. Collectwas accomplished manually and material was examined with a stereoscopicloupe and a microscope. With artificial key aid, 21 phytobenthos andmacrophytes species: 4 Cyanophyta, 9 Chlorophyta, 1 Heterokontophyta, 2Rhodophyta, 3 Bryophyta and 2 Magnoliophyta were identified. The basin lowersof the Manzanares presented the higher species number, being th...

Created: 2016-03-19

Credits: William Senior

NIVELES DE METALES PESADOS EN SEDIMENTOS S... (1)

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To evaluate the water quality along the continental shoresof Venezuela, where fishing communities exploit the clam Tivelamactroides, the concentration of heavy metals (Cu, Mn, Fe, Zn,Cd, Ni, Pb y Cr) was determined in superficial sediments,together with environmental factors (temperature, salinity,dissolved O2, pH, phytoplanctonic biomass, seston, and total Nand P) of the litoral waters of Playa Güiria on the northeasterncoast (Sucre State), and of Río Chico and Boca de Paparo (Mi...

Created: 2016-03-19

Credits: William Senior

MANUAL DE ANÁLISIS DE AGUA DE MAR (1)

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Se describen métodos para el análisis de agua de mar

Created: 2016-03-19

Credits: William Senior

Growth of the tropical scallop, Euvola (Pe... (1)

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We compared the growth of the scallop Euuolu (Pecten) ziczuc (L.) in three situations whichpotentially could be used for commercial culture, in cages maintained in suspension, in cages on thebottom and in cages partly buried in a sediment bottom. The latter permitted the scallops to burythemselves as in their natural habitat. Throughout the 7-month study, growth, as measured by shelllength and muscle mass, was by far superior for scallops in the partly buried cages. Possible explanationsfor t...

Created: 2016-03-19

Credits: William Senior

Influencia del rio Manzanares en la biodis... (1)

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The concentrations of heavy metals Co, Cr, Pb and Zn in the bioavailable fraction in surface sediments of marine-coastal region of the city of Cumana, Venezuela, were studied during periods of drought and rain, in 17 sampling stations located along the shoreline. Significant differences between the two periods of sampling were detected for chromium and lead concentrations, reaching the highest values during the rainy season. For the rest of the metals studied a similar behavior was found for ...

Created: 2016-03-19

Credits: William Senior

Corrientes superficiales en la Bahía de Be... (1)

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Created: 2016-03-19

Credits: William Senior

DISTRIBUCIÓN Y ESPECIACIÓN DE METALES PESA... (1)

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Created: 2016-03-18

Credits: William Senior

ESTUDIO DE LINEA BASE AMBIENTAL, SOCIOECON... (1)

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Created: 2016-03-18

Credits: William Senior

Hello abcd (1)

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Example of using the same inserted nested workflow twice, iterating over it twice, which should mean 4 distinct calls to the inner "concatenate" process. This workflow is mainly useful for provenance testing purposes.

Created: 2016-03-15

Credits: Stian Soiland-Reyes

OA translated experiment (1)

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This workflow is just for trying

Created: 2016-03-01

Credits: jerome chopard

MSA Gaps Trimming Workflow (1)

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The workflow for prefix and suffix gaps trimming of MSA result in the Phylip format.Input: MSA result in the Phylip format.Output: Trimmed prefix and suffix of the MSA result.

Created: 2016-02-28

Credits: Kasikrit Damkliang

MSA Similarity Score Estimation (1)

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The workflow for MSA Similarity Score Estimation 

Created: 2016-02-28

Credits: Kasikrit Damkliang

Get targets for compound (1)

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This workflow retrieves single protein targets for a compound from open PHACTS.

Created: 2016-02-22

Credits: Kristina Hettne Eelke van der Horst Aylin Metzner

Get similar phenotypes for a disease and a... (1)

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This workflow retrieves the similar phenotypes between a disease and a gene based on the Monarch services at http://monarchinitiative.org/page/services. Phenotype similarity is calculated based on OwlSim, see http://owlsim.org.

Created: 2016-02-22

Credits: Kristina Hettne

Scan range splitting for untargeted metabo... (1)

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This workflow analyzes untargeted HPLC-Orbitrap measurements split into separate or alternating scan ranges. The input nodes expect OpenMS consensusXML files that were exported using TextExporter. The workflow then combines the separate scan ranges, filters them utilizing blank and QC measurements, and performs a statistical analysis.Requirements:- KNIME Interactive R Statistics Integration

Created: 2016-01-14 | Last updated: 2016-01-14

Credits: Marc Rurik

TTPish workflow for MASSyPup64 with text s... (1)

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This proteomics workflow performs a comet search and subsequently a validation of the results with PeptideProphet/Protein Prophet. Results are exported in various formats, to facilitate the downstream evaluation in other programs and the sharing of data (EXCEL, csv, mzIdentML).Contrary to a standard Trans-Proteomic-Pipeline (TPP) installation, the workflow can be to mass spectrometry data in whatever localization (i.e. the files do not have to be uploaded/ copied to a special directory).The w...

Created: 2015-12-10

Credits: Robert Winkler

Author Publications and Citations by Year ... (1)

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This workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two Web service calls are made. First, we searchPublications to retrieve the bibliographic records for all published work of a single author. Then, we getCitations to extract the year of all articles citing the work of this author. The pubYear fields is extracted from the raw Web service results and fed to an Rshel...

Created: 2015-12-04

Credits: Magnus Palmblad