myExperiment - Workflows

RapidMiner

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Alexbeo

111 (1)

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This process shows how several different classifiers could be graphically compared by means of multiple ROC curves.

Created: 2010-09-04 | Last updated: 2010-09-04

Trident (Package)

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Vinay TC

Sample for explaining the feature: - Type ... (1)

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The objective of this workflow is to explain the working of the Type Initializer in the Trident application. For detailed information on type initializer and how it can be used please refer the following document:- http://tridentworkflow.codeplex.com/Project/Download/FileDownload.aspx?DownloadId=138922

Created: 2010-09-03 | Last updated: 2010-09-03

Credits: Trident

Trident (Package)

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Vinay TC

IfEls Activity sample for Trident v1.2 (v1) (1)

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The objective of this workflow is to explain the working of the If Else activity in the Trident application. For more information on how to use the if else sample. Please refere the following document. IfElse-Sample Details

Created: 2010-09-03 | Last updated: 2010-09-03

Credits: Trident

Taverna 2

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Mkh

Cow SNP annotation (1)

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SNP annotation

Created: 2010-09-03 | Last updated: 2010-09-03

Credits: Mkh

Trident (Package)

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Vinay TC

Replicator Activity sample for Trident v1.2 (1)

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The objective of this workflow is to explain the working of the Replicator activity in the Trident application. For detailed description of the worklfow please refer the following document. Sample Description

Created: 2010-09-03 | Last updated: 2010-09-03

Credits: Trident

RapidMiner

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Sebastian land

Constructing user defined linear regressio... (1)

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This process shows how one can construct a user defined Linear Regression model using the execute script operator

Created: 2010-09-02 | Last updated: 2010-09-02

Taverna 1

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Lebreton

retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services

Taverna 1

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Lebreton

retrieve nucleotide sequence and do a high... (1)

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retrieve nucleotide sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Taverna 1

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Lebreton

retrieve protein sequence and do a BLAST f... (1)

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retrieve protein sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve protein sequence and do a BLAST and extract position from DDBJ Web services

Taverna 1

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Lebreton

retrieve protein sequence and do a high sp... (1)

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retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

LabTrove Template

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http://...

Characterization Template - Proton NMR (1)

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Template for an NMR expriment and asasociated data files

Created: 2010-08-31 | Last updated: 2010-10-08

Credits: http://thebluerhino.myopenid.com/

RapidMiner

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Simon Fischer

Cross tabulation via aggregation and pivoting (1)

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Creates a contingency table using the Aggregate and Pivot operators.

Created: 2010-08-25 | Last updated: 2010-08-25

RapidMiner

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Awc

Find and replace missing values with other... (1)

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Sometimes, it is helpful to replace a numerical attribute containing a missing value with a value from another attribute in the example row rather than using a constant such as an average or maximum value. This process generates some missing values, detects them and replaces with a calculation based on the value of another attribute. (Purists will be alarmed at the mathematical impossibility of taking the square root of a negative number). The process detects missing values by subtracti...

Created: 2010-08-25 | Last updated: 2010-08-25

Taverna 2

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Bas Vroling

Create custom-made GPCR alignments (1)

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This workflow allows you to create your own GPCR alignments. The alignments are built from the residues that are annotated with the general residue numbers. Alignments are therefore not built using standard alignment algorithms but are created by selecting residues that are likely to share the same position in the three-dimensional structure. Users can select the proteins and residue positions that should be aligned, allowing for the creation of e.g. an alignment of all binding pocket residue...

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: Bas Vroling

Taverna 2

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Bas Vroling

BLAST against the GPCRDB (1)

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With this workflow you can submit a BLAST query to the GPCRDB. Input requires a sequence with amino acids only.

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: Bas Vroling

Taverna 2

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Bas Vroling

Retrieve a protein from the GPCRDB (1)

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This small workflow illustrates how to use the web service access provided by the GPCRDB in Taverna. The proteinId input field is case sensitive and by default the identifiers in the GPCRDB are lowercase. You can try this mini-workflow with e.a. 'adrb2_human'.