Cow SNP annotation
Created: 2010-09-03 09:39:49
Last updated: 2010-09-03 09:42:57
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Authors (0)
Titles (0)
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Inputs (9)
| Name |
Description |
| dbName |
Name of Db to store data
|
| Header2skip |
Number of header in file
|
| FolderAddress |
Folder of input files
|
| chromosome_No_column |
chromosome colum location
|
| Coverage_column |
coverage colum location
|
| genotype_column |
genotype colum location
|
| End_position_column |
start position colum location
|
| Start_positon_column |
end position colum location
|
| refrence_column |
ref colum location
refrence colum location
|
Processors (6)
| Name |
Type |
Description |
| Insert_Enteris_From_File_to_Database |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl Operationinsert2db |
| Prepare_Database_and_Folder |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl Operationprepare |
| LiftOver_from_UMD3_to_Bta4_and_Check_lifting |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl OperationliftCheck |
| Add_information_for_SNP_Within_Exons |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl OperationgetExon |
| Get_Consequence_of_SNP_Within_Exon |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl OperationgetConseq |
| getPolyphen |
wsdl |
Wsdlhttp://127.0.0.1/CowSeq.xmlWsdl OperationgetPolyphen |
Outputs (6)
| Name |
Description |
| prep_report |
|
| Insert_report |
|
| liftCheck_report |
|
| getExon_report |
|
| getConseq_report |
|
| getPolyphen_report |
|
Datalinks (23)
| Source |
Sink |
| Prepare_Database_and_Folder:runID |
Insert_Enteris_From_File_to_Database:runID |
| Prepare_Database_and_Folder:dbname |
Insert_Enteris_From_File_to_Database:dbname |
| refrence_column |
Insert_Enteris_From_File_to_Database:ref |
| Start_positon_column |
Insert_Enteris_From_File_to_Database:pos |
| End_position_column |
Insert_Enteris_From_File_to_Database:pose |
| Header2skip |
Insert_Enteris_From_File_to_Database:headno |
| genotype_column |
Insert_Enteris_From_File_to_Database:gen |
| Coverage_column |
Insert_Enteris_From_File_to_Database:cov |
| chromosome_No_column |
Insert_Enteris_From_File_to_Database:chr |
| FolderAddress |
Insert_Enteris_From_File_to_Database:folder |
| dbName |
Prepare_Database_and_Folder:dbname |
| dbName |
LiftOver_from_UMD3_to_Bta4_and_Check_lifting:dbname |
| dbName |
Add_information_for_SNP_Within_Exons:dbname |
| dbName |
Get_Consequence_of_SNP_Within_Exon:dbname |
| dbName |
getPolyphen:dbname |
| Get_Consequence_of_SNP_Within_Exon:polyInput |
getPolyphen:polyInput |
| Get_Consequence_of_SNP_Within_Exon:polySeq |
getPolyphen:polySeq |
| Prepare_Database_and_Folder:report |
prep_report |
| Insert_Enteris_From_File_to_Database:report |
Insert_report |
| LiftOver_from_UMD3_to_Bta4_and_Check_lifting:report |
liftCheck_report |
| Add_information_for_SNP_Within_Exons:report |
getExon_report |
| Get_Consequence_of_SNP_Within_Exon:report |
getConseq_report |
| getPolyphen:report |
getPolyphen_report |
Coordinations (5)
| Controller |
Target |
| Get_Consequence_of_SNP_Within_Exon |
getPolyphen |
| Add_information_for_SNP_Within_Exons |
Get_Consequence_of_SNP_Within_Exon |
| LiftOver_from_UMD3_to_Bta4_and_Check_lifting |
Add_information_for_SNP_Within_Exons |
| Prepare_Database_and_Folder |
Insert_Enteris_From_File_to_Database |
| Insert_Enteris_From_File_to_Database |
LiftOver_from_UMD3_to_Bta4_and_Check_lifting |
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Version 1
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