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Workflows

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Taverna 2

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Kristina Hettne

chebi2keggID (1)

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This workflow converts a (list of) chebi identifiers to kegg compound identifiers.

Created: 2016-06-21

Credits: Kristina Hettne

Taverna 2

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Davy Cats

GOgetter (no merge) (1)

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Retrieves all GO terms (with experimental evidence) associated with the given genelist. The GO terms are returned in a list per gene.

Created: 2016-06-10

Credits: Davy Cats Tom Rosman

Taverna 2

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Tom Rosman

Get from a Pathway the Go fucntion from Kegg (1)

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This workflow gets from a Pathway nr the Go term from the Kegg database and then looks up the go function in the AMIGO database.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

Attributions: get the function of Go terms.

Taverna 2

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Tom Rosman

get the function of Go terms. (1)

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This workflow uses the AMIGO database to get functions descriptions for Go terms.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

Taverna 2

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Tom Rosman

Finding gene difference in pathways betwee... (1)

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Looks up the all the genes in pathways with the Kegg database between to different organismes.

Created: 2016-06-10

Credits: Tom Rosman

Taverna 2

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Tom Rosman

pathway difference in ortholog genes (1)

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This workflow looks at a set of human genes and search for the orthologs of mouse and rat. Then it gets for all the genes the pathways linked to it in Kegg and search for difference in them.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

Taverna 2

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Davy Cats

GOgetter (2)

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Retrieves all GO terms with experimental evidence associated with the given genelist. A GO term may apear multiple times in the resulting list if it is associated with multiple genes.