Sponge into Virtuoso triplestore the needed ressource from PubMed [myexperiment:pubmed_step3_describe]

None

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Name	Description
graph
sparql_endpoint
sparql_query

Name	Type	Description
Insert_ntriples	workflow
Pubmed_xml_rdfiser	workflow
SPARQL_query	workflow
Split_string_into_string_list_by_regular_expression	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
semicolon	stringconstant	Value ;
Count	workflow

Name	Inputs	Outputs
SPARQL_insert_ntriples	ntriples graph sparql_host sparql_port	html
Concat_log_message	msg graph sparql_url subject	log
Split_sparql_url	sparql_url	host port
First_subject	ntriples	subject
Create_directory	directory	log directory_copy
Get_NCBI_XML_By_ID_Namespace	id rettype retmode namespace	outputText
split_bmuri	bmuri	namespace id
build_xml_filename	path namespace id	xml_filename
test_if_filename_exist	filename id	id_copy
build_filename_nt	filename_xml	filename_nt
test_file_exists	filename	filename_xml
Filter_list_of_strings_extracting_match_to_a_regex	stringlist regex group	filteredlist count
Build_sparql_url	sparql_query sparql_endpoint graph	sparql_query_url
stringlist_count	in	out

Name	Description
o2
bio2rdf_subject_fetch_pubmed_log
o1

Source	Sink
graph	Insert_ntriples:graph
Pubmed_xml_rdfiser:ncbi_pubmed_xml2ntriples	Insert_ntriples:ntriples
sparql_endpoint	Insert_ntriples:sparql_endpoint_url
Count:utility_stringlist_count	Pubmed_xml_rdfiser:pubmed_bmuri
sparql_endpoint	SPARQL_query:sparql_endpoint
graph	SPARQL_query:graph
Split_string_into_string_list_by_regular_expression:split	SPARQL_query:sparql_query
sparql_query	Split_string_into_string_list_by_regular_expression:string
semicolon:value	Split_string_into_string_list_by_regular_expression:regex
SPARQL_query:sparql_query_bmuri_list	Count:stringlist
Pubmed_xml_rdfiser:ncbi_pubmed_xml2ntriples	o2
Insert_ntriples:sparql_insert_ntriples_log	bio2rdf_subject_fetch_pubmed_log
SPARQL_query:sparql_query_bmuri_list	o1

Sponge into Virtuoso triplestore the needed ressource from PubMed [myexperiment:pubmed_step3_describe]

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