caviar cardiac application

Created: 2009-05-23 17:49:08 Last updated: 2009-05-23 17:52:04

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Applications details in the following paper:
Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009

The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.

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Workflow Components

Inputs (7)

Name	Description
image_mhd
model_r0_best_resolution_vtk
model_r1_vtk
model_r2_vtk
model_r3_worst_resolution_vtk
template_init_par
force_factor

Processors (8)

Name	Type	Description
config	stringconstant
mhd2qc_description	stringconstant
init_desc	stringconstant
mhd2qc	arbitrarywsdl	Service definition of function ns__GASWexecution
det3D4	arbitrarywsdl	Service definition of function ns__GASWexecution
cannyAndDistanceMapAndInitModel	arbitrarywsdl	Service definition of function ns__GASWexecution
putOnWebServer	beanshell
putOnWebServer1	beanshell

Beanshells (2)

Name	Description	Inputs	Outputs
putOnWebServer		lfn	out
putOnWebServer1		lfn	out

Outputs (10)

Name	Description
results_tgz
result_mesh_vtk
initialized_surface_r0
initialized_volume_r3
initialized_image
initialized_volume_r2
initialized_volume_r1
initialized_volume_r0
image_header
image_vol

Links (30)

Source	Sink
cannyAndDistanceMapAndInitModel:result1	det3D4:input5
cannyAndDistanceMapAndInitModel:result3	det3D4:input4
cannyAndDistanceMapAndInitModel:result4	det3D4:input3
cannyAndDistanceMapAndInitModel:result5	det3D4:input2
config:value	det3D4:config-file
force_factor	det3D4:input6
image_mhd	mhd2qc:input0
init_desc:value	cannyAndDistanceMapAndInitModel:config-file
mhd2qc:result0	cannyAndDistanceMapAndInitModel:input0
mhd2qc:result0	det3D4:input0
mhd2qc:result1	det3D4:input1
model_r0_best_resolution_vtk	cannyAndDistanceMapAndInitModel:input2
model_r1_vtk	cannyAndDistanceMapAndInitModel:input4
model_r2_vtk	cannyAndDistanceMapAndInitModel:input5
model_r3_worst_resolution_vtk	cannyAndDistanceMapAndInitModel:input6
template_init_par	cannyAndDistanceMapAndInitModel:input3
cannyAndDistanceMapAndInitModel:result5	putOnWebServer1:lfn
det3D4:result1	putOnWebServer:lfn
mhd2qc:result1	cannyAndDistanceMapAndInitModel:input1
mhd2qc_description:value	mhd2qc:config-file
cannyAndDistanceMapAndInitModel:result0	initialized_surface_r0
cannyAndDistanceMapAndInitModel:result1	initialized_volume_r0
cannyAndDistanceMapAndInitModel:result2	initialized_image
cannyAndDistanceMapAndInitModel:result3	initialized_volume_r1
cannyAndDistanceMapAndInitModel:result4	initialized_volume_r2
det3D4:result0	results_tgz
mhd2qc:result0	image_header
mhd2qc:result1	image_vol
putOnWebServer1:out	initialized_volume_r3
putOnWebServer:out	result_mesh_vtk

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Glatard

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Information Version 1 (of 1)

Information Credits (1)

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Glatard

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Information Tags (1)

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medical imaging

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Information Statistics

1467 viewings

1387 downloads

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Version History

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caviar cardiac application

Created by Glatard on Saturday 23 May 2009 17:49:08 (UTC)

Last edited by Glatard on Saturday 23 May 2009 17:52:05 (UTC)

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