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Items tagged with "medical imaging" (8)

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Andreas Hoheisel

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MediGRID

Unique name: medigrid
Created: Tuesday 25 November 2008 13:25:33 (UTC)

This group contains members from the MediGRID project, which is one of the D-Grid community projects in Germany. The main goal of MediGRID is the Development of a Grid middleware integration platform enabling eScience services for biomedical life science. MediGRID uses the Petri-net-based GWorkflowDL for modeling workflows and the GWES for executing them on a Globus Toolkit 4 based Grid with a...

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Workflows (7)

Taverna 1

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Glatard

feat (3)

This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.

Created: 2008-03-18 | Last updated: 2008-05-19

Credits: Glatard

Taverna 1

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Glatard

feat_workflow (2)

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Created: 2009-02-03

Credits: Glatard

GWorkflowDL

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Andreas Hoheisel

MediGRID FEAT Workflow (1)

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This workflow is a translation of the VLeMed workflow to the GWorkflowDL format, which is used in MediGRID. The translation of the "cross product" iteration strategy is currrently under work and not yet finished. So this workflow only varies the parameters p1, p2, and p3.

Created: 2009-02-13

Credits: Andreas Hoheisel

Attributions: feat_workflow

Taverna 1

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Glatard

caviar cardiac application (1)

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Applications details in the following paper: Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009 The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.

Created: 2009-05-23 | Last updated: 2009-05-23

Credits: Glatard

Chemistry Plan

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Glatard

GATE Monte-Carlo simulations (3)

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Application description is found in the following papers: Jan S et al, GATE: a simulation toolkit for PET and SPECT. Phys. Med. Biol. 49 (2004) 4543-4561 Sarrut D. and Guigues L. Region-oriented CT image representation for reducing computing time of Monte Carlo simulations. Med Phys. 35(4):1452-1463. 2008 Two components (fgate and merge, merge being disabled in experiments conducted for the heteropar and JGC papers) are run on the EGEE grid. A quite elaborated workflow is ma...

Created: 2009-05-23 | Last updated: 2009-08-13

Credits: Glatard

Gwendia

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Glatard

Positron Emission Tomography simulation wi... (1)

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This workflow implements Positron Emission Tomography simulation with PET-Sorteo http://sorteo.cermep.fr/. It is developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).

Created: 2011-04-18 | Last updated: 2011-04-18

Credits: Glatard

Gwendia

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Glatard

Magnetic Resonance Image simulation with S... (1)

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This workflow implements MRI simulation with SIMRI (http://simri.eu). It is developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).

Created: 2011-04-18 | Last updated: 2011-04-18

Credits: Glatard

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Non-Information Resource URI: http://www.myexperiment.org/tags/756

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