BioAID_ProteinDiscovery
The workflow extracts protein names from documents retrieved from MedLine based on a user Query (cf Apache Lucene syntax). The protein names are filtered by checking if there exists a valid UniProt ID for the given protein name.
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BioAID_ProteinDiscovery_filterOnHumanUnipr... (11)
Created: 2009-05-28
Credits: Marco Roos Martijn Schuemie AID AID_myGrid_collaboration
Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter
Created: 2007-11-14 | Last updated: 2007-11-15
Credits: Marco Roos Martijn Schuemie AID
Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter
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This workflow was reported to occasionally have time out issues. Alan Williams (myGrid) e-mailed these pointers for addressing this problem:
"If it is only in the validation report, then you can either just ignore the report and still run the workflow. Or, you can change the timeout that the validator uses. To do that go to Preferences (under the top level menu Taverna or File) -> Validation report and change "Reporting timeout in seconds (per service)". By default it is 10 seconds. Note that the validation timeout can be short because it just does a quck "ping" to check that the remote machine is talking.
If you need to change the timeout for the running of the service, then see the e-mail thread at http://taverna-users.markmail.org/thread/xozdzqhkbxmuw4nc"
Many thanks to Alan for this information.
We are also in the process of updating and extending our BioSemantics Web Services, including the 'SynSets' service that is used in this workflow. More information about the BioSemantics group can be found on biosemantics.org.