feat_workflow

Created: 2009-02-03 15:30:15

Download Workflow

No description has been set

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/639/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (11)

Name	Description
designFileTemplate
feat_files_1
highres_file
fmri_custom1
fmri_custom2
fmri_custom3
PAR_file
fmri_reghighres_dof
fmri_smooth
fmri_convolve_phase
fmri_regstandard_dof

Processors (3)

Name	Type	Description
feat_description	stringconstant
empty	stringconstant
feat	arbitrarywsdl	Service definition of function ns__GASWexecution

Beanshells (0)

Outputs (1)

Name	Description
feat_dir

Links (19)

Source	Sink
PAR_file	feat:input12
designFileTemplate	feat:input6
feat_files_1	feat:input7
fmri_convolve_phase	feat:input2
fmri_convolve_phase	feat:input3
fmri_convolve_phase	feat:input4
fmri_custom1	feat:input9
fmri_custom2	feat:input10
fmri_custom3	feat:input11
fmri_reghighres_dof	feat:input0
fmri_regstandard_dof	feat:input5
fmri_smooth	feat:input1
highres_file	feat:input8
empty:value	feat:command-line
empty:value	feat:input13
empty:value	feat:input14
empty:value	feat:input15
feat_description:value	feat:config-file
feat:result0	feat_dir

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Glatard

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Glatard

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

medical imaging

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (1)

(Workflows/Files)

MediGRID FEAT Workflow

Information Favourited By (0)

No one

Information Statistics

2760 viewings

1746 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

FSL feat individual analysis

Created by Glatard on Wednesday 28 January 2009 16:50:31 (UTC)

Last edited by Glatard on Wednesday 28 January 2009 17:24:16 (UTC)
feat_workflow

Created by Glatard on Tuesday 03 February 2009 15:30:15 (UTC)

Revision comment:

Removed from EGEE-specific things in the executable.

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (2)

Taverna 1

Uploader

Glatard

feat (3)

This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.

Created: 2008-03-18 | Last updated: 2008-05-19

Credits: Glatard

Taverna 1

Uploader

Glatard

feat FSL group analysis (1)

Download

This workflow is to be run on results obtained from this one (couldn't manage to find a clean solution for merging those two in Scufl). Processor "feat_group": 1. builds the experiment intput (design) file from template and input parameters 2. calls feat FSL Processor "roi" reads activation maps produced by feat_group, extract a region of interest and compute the mean, stdev, max and min activation within it. Here is a sample input in VBrowser's XML dialect. Below is...

Created: 2009-01-28 | Last updated: 2009-01-28

Credits: Glatard