Online PubMed author search and geographic affiliation mapping

Created: 2015-08-19 09:01:34 Last updated: 2015-09-07 11:58:18

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This workflow retrieves bibliographic data for a single author using the PMC Europe RESTful Web service and visualizes the geographic distribution of this author's and their co-authors' geographic distribution using the rworldmap package. This is version 2.0 of this workflow, incorporating changes to the Web service allowing up to 1,000 records to be retrieved at once, using the pageSize parameter.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (3)

Name	Description
countries
former_countries
author_name

Processors (2)

Name	Type	Description
map_affiliations	workflow
get_publications	workflow

Beanshells (3)

Name	Inputs	Outputs
count_affiliations_by_country	affiliations country_name country_code	country_list count_list
map_former_countries	meta_count_list meta_country_list former_countries_list current_countries_list	count_list country_list
build_query	author_name	offSets pageSize queryString resultType

Outputs (1)

Name	Description
world_map

Datalinks (5)

Source	Sink
countries	map_affiliations:countries
former_countries	map_affiliations:former_countries
get_publications:publications	map_affiliations:publications
author_name	get_publications:author_name
map_affiliations:world_map	world_map

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Information Workflow Type

Taverna 2

Information Uploader

Magnus Palmblad

Information License

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Information Version 2 (latest) (of 2)

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Information Tags (4)

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Information Shared with Groups (1)

Bibliometrics and Scientometrics

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Information Favourited By (1)

Magnus Palmblad

Information Statistics

1701 viewings

914 downloads

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Version History

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Online PubMed author search and geographic affiliation mapping

Created by Magnus Palmblad on Wednesday 19 August 2015 09:01:31 (UTC)
Online PubMed author search and geographic affiliation mapping

Created by Magnus Palmblad on Monday 07 September 2015 11:58:18 (UTC)

Revision comment:

The revised version of the workflow uses the pageSize parameter to retrieve records in chunks of 1,000, rather than 25 which was the previous limit. Up to five such chunks, or 5,000 records, can be retrieved with this workflow. This is probably sufficient for all individual author analyses, but can easily be extended as needed.

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