setp2
Created: 2014-01-30 13:59:13
Last updated: 2014-01-30 13:59:50
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Workflow Components
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Inputs (0)
|  |
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Processors (11)
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| Name |
Type |
Description |
| query |
stringconstant |
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| style |
stringconstant |
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| format |
stringconstant |
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| parametersXML |
local |
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| transeqXML |
local |
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| runAndWaitFor_param |
local |
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| sequenceXML |
local |
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| transeqResultXML |
local |
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| fetchData |
arbitrarywsdl |
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| runAndWaitFor |
arbitrarywsdl |
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| Merge_string_list_to_string |
local |
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Beanshells (0)
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Outputs (5)
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| Name |
Description |
| result_sequence |
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| nucle_sequence |
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| debug_trans_report |
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| debug_detail_status |
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| debug_file |
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Links (15)
| |
| Source |
Sink |
| Merge_string_list_to_string:concatenated |
sequenceXML:sequence_direct_data |
| Merge_string_list_to_string:concatenated |
debug_file |
| fetchData:fetchDataReturn |
Merge_string_list_to_string:stringlist |
| fetchData:fetchDataReturn |
nucle_sequence |
| format:value |
fetchData:format |
| parametersXML:transeqResult |
transeqResultXML:input |
| query:value |
fetchData:query |
| runAndWaitFor:parameters |
parametersXML:input |
| runAndWaitFor_param:output |
runAndWaitFor:parameters |
| sequenceXML:output |
transeqXML:sequence |
| style:value |
fetchData:style |
| transeqXML:output |
runAndWaitFor_param:transeq |
| transeqResultXML:detailed_status |
debug_detail_status |
| transeqResultXML:outseq |
result_sequence |
| transeqResultXML:report |
debug_trans_report |
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Coordinations (0)
| |
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Translate Nucleotide sequence into Peptide sequence using EBI Service.
Find nucleotide sequence from EBI wsdbfetch(using ref.seq Id NM_005700)
2. Translation nucleotide sequence(from 1) into peptide sequence using EBI EMBOSS4 transeq.
Created: 2007-10-03
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This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...
Created: 2008-09-22
Credits:
Steffen Möller
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