Translate Nucleotide sequence into Peptide sequence

Created: 2007-10-03 18:36:27

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Translate Nucleotide sequence into Peptide sequence using EBI Service.

Find nucleotide sequence from EBI wsdbfetch(using ref.seq Id NM_005700)

Translation nucleotide sequence(from 1) into peptide sequence using EBI EMBOSS4 transeq.

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Workflow Components

Inputs (0)

Processors (11)

Name	Type	Description
query	stringconstant
style	stringconstant
format	stringconstant
parametersXML	local
transeqXML	local
runAndWaitFor_param	local
sequenceXML	local
transeqResultXML	local
fetchData	arbitrarywsdl
runAndWaitFor	arbitrarywsdl
Merge_string_list_to_string	local

Beanshells (0)

Outputs (5)

Name	Description
result_sequence
nucle_sequence
debug_trans_report
debug_detail_status
debug_file

Links (15)

Source	Sink
Merge_string_list_to_string:concatenated	sequenceXML:sequence_direct_data
Merge_string_list_to_string:concatenated	debug_file
fetchData:fetchDataReturn	Merge_string_list_to_string:stringlist
fetchData:fetchDataReturn	nucle_sequence
format:value	fetchData:format
parametersXML:transeqResult	transeqResultXML:input
query:value	fetchData:query
runAndWaitFor:parameters	parametersXML:input
runAndWaitFor_param:output	runAndWaitFor:parameters
sequenceXML:output	transeqXML:sequence
style:value	fetchData:style
transeqXML:output	runAndWaitFor_param:transeq
transeqResultXML:detailed_status	debug_detail_status
transeqResultXML:outseq	result_sequence
transeqResultXML:report	debug_trans_report

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Information Workflow Type

Taverna 1

Information Uploader

Hong Chang Bum

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Information Version 2 (latest) (of 2)

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Information Statistics

4193 viewings

3213 downloads

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Version History

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setp2

Created by Hong Chang Bum on Wednesday 03 October 2007 18:36:27 (UTC)
Translate Nucleotide sequence into Peptide sequence

Created by Hong Chang Bum on Wednesday 03 October 2007 18:36:27 (UTC)

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Kasikrit

Hi,
I try to re-compose yr workflow and I can't find local java service (purple) in Taverna. How I find it?

Thanks,
Kasikrit

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