setp2

Created: 2014-01-30 13:59:13 Last updated: 2014-01-30 13:59:50

Download Workflow

Traduction test

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/4027/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (0)

Processors (11)

Name	Type	Description
query	stringconstant
style	stringconstant
format	stringconstant
parametersXML	local
transeqXML	local
runAndWaitFor_param	local
sequenceXML	local
transeqResultXML	local
fetchData	arbitrarywsdl
runAndWaitFor	arbitrarywsdl
Merge_string_list_to_string	local

Beanshells (0)

Outputs (5)

Name	Description
result_sequence
nucle_sequence
debug_trans_report
debug_detail_status
debug_file

Links (15)

Source	Sink
Merge_string_list_to_string:concatenated	sequenceXML:sequence_direct_data
Merge_string_list_to_string:concatenated	debug_file
fetchData:fetchDataReturn	Merge_string_list_to_string:stringlist
fetchData:fetchDataReturn	nucle_sequence
format:value	fetchData:format
parametersXML:transeqResult	transeqResultXML:input
query:value	fetchData:query
runAndWaitFor:parameters	parametersXML:input
runAndWaitFor_param:output	runAndWaitFor:parameters
sequenceXML:output	transeqXML:sequence
style:value	fetchData:style
transeqXML:output	runAndWaitFor_param:transeq
transeqResultXML:detailed_status	debug_detail_status
transeqResultXML:outseq	result_sequence
transeqResultXML:report	debug_trans_report

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Alice Heliou

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Alice Heliou

Information Attributions (0)

(Workflows/Files)

None

Information Tags (0)

None

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

594 viewings

579 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

setp2

Created by Alice Heliou on Thursday 30 January 2014 13:59:13 (UTC)

Last edited by Alice Heliou on Thursday 30 January 2014 13:59:49 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (4)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Hong Chang Bum

Translate Nucleotide sequence into Peptide... (2)

Download

Translate Nucleotide sequence into Peptide sequence using EBI Service. Find nucleotide sequence from EBI wsdbfetch(using ref.seq Id NM_005700) 2. Translation nucleotide sequence(from 1) into peptide sequence using EBI EMBOSS4 transeq.

Created: 2007-10-03

Taverna 1

Uploader

Steffen MÃ¶ller

dbfetch tutorial (1)

Download

This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...

Created: 2008-09-22

Credits: Steffen MÃ¶ller