biostif_show_projections

None

BufferedReader getReader (String fileUrl, String encoding) throws IOException {
		InputStreamReader reader;
		try {
			if (encoding == null) {
				reader = new FileReader(fileUrl);
			} else {
				reader = new InputStreamReader(new FileInputStream(fileUrl),encoding); 
			}
		}
		catch (FileNotFoundException e) {
			// try a real URL instead
			URL url = new URL(fileUrl);
			if (encoding == null) {
				reader = new InputStreamReader (url.openStream());
			} else {
				reader = new InputStreamReader (url.openStream(), encoding);
			}
		}
		return new BufferedReader(reader);
	}


StringBuffer sb = new StringBuffer(4000);

if (encoding == void) {
	encoding = null;
}

BufferedReader in = getReader(fileurl, encoding);
String str;
String lineEnding = System.getProperty("line.separator");

while ((str = in.readLine()) != null) {
	sb.append(str);
	sb.append(lineEnding);
}
in.close();
filecontents = sb.toString();

Name	Description
csvDataURI	The BioSTIF identifier (URI) for species occurrence points.
user_layer_definition	Comma separated list of BioSTIF layer identifiers to be displayed.

Name	Type	Description
BioSTIFInteraction	interaction	Interaction Page http://biovel.at.biovel.eu/biostif/interaction.debug.jsp
contentType	stringconstant	Value csv
Read_Text_File	localworker	Script BufferedReader getReader (String fileUrl, String encoding) throws IOException { InputStreamReader reader; try { if (encoding == null) { reader = new FileReader(fileUrl); } else { reader = new InputStreamReader(new FileInputStream(fileUrl),encoding); } } catch (FileNotFoundException e) { // try a real URL instead URL url = new URL(fileUrl); if (encoding == null) { reader = new InputStreamReader (url.openStream()); } else { reader = new InputStreamReader (url.openStream(), encoding); } } return new BufferedReader(reader); } StringBuffer sb = new StringBuffer(4000); if (encoding == void) { encoding = null; } BufferedReader in = getReader(fileurl, encoding); String str; String lineEnding = System.getProperty("line.separator"); while ((str = in.readLine()) != null) { sb.append(str); sb.append(lineEnding); } in.close(); filecontents = sb.toString();
species_datasource_name	stringconstant	Value species_points

Name	Description
csvResultData
csvDataUri

Source	Sink
contentType:value	BioSTIFInteraction:contentType
csvDataURI	BioSTIFInteraction:dataURI
user_layer_definition	BioSTIFInteraction:layer
species_datasource_name:value	BioSTIFInteraction:label
BioSTIFInteraction:resultURIs	Read_Text_File:fileurl
Read_Text_File:filecontents	csvResultData
BioSTIFInteraction:resultURIs	csvDataUri

biostif_show_projections

Preview

Run

Run this Workflow in the Taverna Workbench...

Workflow Components

Interaction Page

Value

Script

Value

Reviews (0)

Comments (0)

Other workflows that use similar services (0)