myExperiment

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Biodiversity eLaboratory

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DEPRECATED - Matrix Population Models construction a...

Created: 2012-11-02 10:48:48 | Last updated: 2014-09-17 10:44:21

This pack is deprecated. To obtain a more recent version of this pack, please refer to: http://www.myexperiment.org/packs/483.html The Matrix Population Models Workflow provides an environment to create a stage-matrix with no density dependence and to perform several analyses on it:- Eigen analysis;- Age specific survival;- Generation time (T);- Net reproductive rate (Ro);- Transient Dynamics;- Bootstrap of observed census transitions (Confidence intervals of λ).This workflow has ...

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Maria Paula Balcazar-Vargas

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Matrix Population Model construction and analysis pack

Created: 2013-08-13 14:31:09 | Last updated: 2015-06-12 13:48:43

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distanceTh...

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Maria Paula Balcazar-Vargas

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Matrix Population Models analyses pack

Created: 2013-08-14 10:37:55 | Last updated: 2014-07-25 10:56:14

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment to perform several analyses on a stage-matrix with no density dependence:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Resample a projection matrix (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distance This workflow has bee...

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Maria Paula Balcazar-Vargas

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Integral Projection Models pack

Created: 2013-08-13 12:51:30 | Last updated: 2015-06-12 13:48:44

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Integral Projection Model (IPM) Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters elasticity and sensitivity o...

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Ferenc HORVATH

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Ecosystem modelling with Biome-BGC

Created: 2015-05-19 09:00:27 | Last updated: 2015-06-12 13:48:45

Brings together 5 workflows for ecosystem modelling and calculation of ecosystem service indicators. These workflows are developed around the Biome-BGC biogeochemical modelling software that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000).See descriptions of individual workflows for more details.The workflows in this pack have been created by the Biodiversity Virtua...

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Biodiversity eLaboratory

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Application of Ecological Niche Modelling and Earth ...

Created: 2014-08-04 14:18:00 | Last updated: 2014-08-04 15:44:20

This pack contains some of the data, workflows and results that are described in the "MarCoast II - Marine and Coastal Environmental Information Services Ballast Water Option" report by:Kerstin Stelzer (Brockmann Consult GmbH)Karin HeyerDr. Sarah Bourlat (SeAnalytics AB)Dr. Matthias Obst (SeAnalytics AB)ScopeThis report describes the work that has been performed in the Ballast Water Option in the framework of the ESA GSE project Marcoast-2. The Option was dedicated to...

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Biodiversity eLaboratory

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Mapping present and future predicted distribution pa...

Created: 2014-08-04 09:48:54 | Last updated: 2014-08-05 10:28:43

This pack gathers together some of the data, results and workflows used in the "Mapping present and future predicted distribution patterns for a meso-grazer guild in the Baltic Sea" study byLeidenberger, Sonja; University of Gothenburg, Department of Biology and Environmental Sciences - KristinebergDe Giovanni, Renato; Centro de Referência em Informação Ambiental, Centro de Referência em InformaçãoKulawik, Robert; Fraunhofer IAI...

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Renato De Giovanni

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ENM components

Created: 2013-12-06 17:57:57 | Last updated: 2014-11-17 19:06:40

ENM Components is a set of Taverna components (sub-workflows) specialized in ecological niche modelling (ENM) tasks. They simplify the creation of new workflows by encapsulating details that may not be trivial to implement and they can be reused across different workflows. To use ENM components on new workflows with the Taverna workbench, just click on “import new service” on the “service panel”, choose “component service”, select “myExperiment”...

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component family

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Saverio Vicario

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Analysis of environmental sequences

Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

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Saverio Vicario

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Perform Short Bayesian Phylogenetic Inference

Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

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