biostif_upload_points
Created: 2013-12-24 11:11:08
Last updated: 2014-10-24 16:48:00
Uploads species occurrence points to BioSTIF server.
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Workflow Components
Authors (1)
| Vera Hernandez & Renato De Giovanni |
Titles (1)
| Upload CSV data to BioSTIF server. |
Descriptions (1)
| This workflow uploads point data in csv format to the BioSTIF service, so that it can be displayed in subsequent BioSTIF interactions. |
Dependencies (0)
Inputs (1)
| Name |
Description |
| csvDataContent |
The content to be loaded to STIF as Datasource in csv format
|
Processors (4)
| Name |
Type |
Description |
| upload_Data |
rest |
|
| trimRESTurlResult |
beanshell |
ScriptresultUrl = url.trim(); |
| checkDataUpload |
beanshell |
Scriptimport java.lang.Integer;
import java.util.ArrayList;
ArrayList dataUpload_ok = new ArrayList();
ArrayList dataUpload_failed = new ArrayList();
int statusInt = Integer.parseInt(status);
if ((statusInt == 200) || (statusInt == 201)) {
dataUpload_ok.add("ok");
uploadStatus = "finished";
} else if (statusInt >= 400) {
dataUpload_failed.add("error");
uploadStatus = "finished";
} else {
uploadStatus = "running";
} |
| handle_upload_failure |
workflow |
|
Beanshells (2)
| Name |
Description |
Inputs |
Outputs |
| trimRESTurlResult |
|
url
|
resultUrl
|
| checkDataUpload |
|
status
|
dataUpload_ok
dataUpload_failed
uploadStatus
|
Outputs (4)
| Name |
Description |
| uploadStatus |
Returns the value "finished" when everything works fine.
|
| failureMsg |
Error message in case of failure. Returns an empty list otherwise.
|
| csvDataURI |
The BioSTIF identifier (URI) for species occurrence points.
|
| dataUploadOK |
Returns a list with the value "ok" when everything works fine.
|
Datalinks (8)
| Source |
Sink |
| csvDataContent |
upload_Data:inputBody |
| upload_Data:responseBody |
trimRESTurlResult:url |
| upload_Data:status |
checkDataUpload:status |
| checkDataUpload:dataUpload_failed |
handle_upload_failure:sentinel |
| checkDataUpload:uploadStatus |
uploadStatus |
| handle_upload_failure:STIFInteractionFailed |
failureMsg |
| trimRESTurlResult:resultUrl |
csvDataURI |
| checkDataUpload:dataUpload_ok |
dataUploadOK |
Coordinations (1)
| Controller |
Target |
| checkDataUpload |
trimRESTurlResult |
Uploader
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License
All versions of this Workflow are
licensed under:
Version 5 (latest)
(of 5)
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