Detrprok

Created: 2013-05-20 22:29:45      Last updated: 2015-11-03 11:12:12

In the case study of stranded and prokaryotic RNAseq data, the Det'Rprok workflow detects candidates of 3 kinds of non coding RNA: 5'UTRs, antisense RNAs, and small RNAs.

Inputs: i) an mapping file (bam format) containing one valid alignment by read, ii) a feature file (gff format) annotating the genomic sequences used for the mapping. 

Dependencies (from the Galaxy toolshed): "s_mart", "detrprok_scripts"

Information Preview

Medium

Information Import

Not currently available.


Information Workflow Components

Inputs (16)
Steps (43)
Outputs (41)

Information Workflow Type

Galaxy

Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 4 (latest) (of 4)

View version:

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (6)

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

 

Citations (0)

None


Version History

In chronological order:



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (0)

No comments yet

Log in to make a comment




Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.