Name |
Tool |
Description |
Input dataset |
None |
|
Input dataset |
None |
|
compare overlapping small query |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0 |
|
compare overlapping small query |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0 |
|
compare overlapping small query |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0 |
|
Concatenate datasets |
cat1 |
|
restrict from size |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/restrictFromSize/1.0.0 |
|
restrict from size |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/restrictFromSize/1.0.0 |
|
clusterize |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 |
|
select by tag |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/SelectByTag/1.0.0 |
|
select by tag |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/SelectByTag/1.0.0 |
|
remove exon lines |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/removeExonLines/1.0.0 |
|
clean transcript file |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CleanTranscriptFile/1.0.0 |
|
clusterize |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 |
|
clusterize |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 |
|
collapse reads |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0 |
|
remove exon lines |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/removeExonLines/1.0.0 |
|
remove exon lines |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/removeExonLines/1.0.0 |
|
splitTranscriptGff |
toolshed.g2.bx.psu.edu/repos/clairetn/detrprok_scripts/splitTranscriptGff/1.0.0 |
|
change tag name |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeTagName/1.0.0 |
|
change tag name |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeTagName/1.0.0 |
|
compare overlapping small reference |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallRef/1.0.0 |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
BAM-to-SAM |
bam_to_sam |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
change tag name |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeTagName/1.0.0 |
|
colorGff |
toolshed.g2.bx.psu.edu/repos/clairetn/detrprok_scripts/colorGff/1.0.0 |
|
colorGff |
toolshed.g2.bx.psu.edu/repos/clairetn/detrprok_scripts/colorGff/1.0.0 |
|
Extract features |
Extract_features1 |
|
Extract features |
Extract_features1 |
|
Extract features |
Extract_features1 |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
clusterize |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 |
|
restrict from size |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/restrictFromSize/1.0.0 |
|
select by tag |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/SelectByTag/1.0.0 |
|
change GFF features |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/changeGffFeatures/1.0.0 |
|
colorGff |
toolshed.g2.bx.psu.edu/repos/clairetn/detrprok_scripts/colorGff/1.0.0 |
|
clusterize |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 |
|
remove exon lines |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/removeExonLines/1.0.0 |
|
remove exon lines |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/removeExonLines/1.0.0 |
|
collapse reads |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0 |
|
compare overlapping small query |
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0 |
|
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