Visualize PAV provenance as SVG

Created: 2013-03-05 23:36:36 Last updated: 2013-04-05 10:05:39

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance.

Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 with Taverna 2.4.0.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
voidURI	URI for a RDF Turtle file containing VoID description. Note that the input is the URI as a string (in order to get the correct @base), don't use "Set URL" button!

Processors (4)

Name	Type	Description
fetchVoid	workflow
clean	workflow
owlreason	workflow
prov2svg	workflow

Beanshells (0)

Outputs (1)

Name	Description
provSVG

Datalinks (6)

Source	Sink
voidURI	fetchVoid:turtleURI
fetchVoid:turtle	clean:unclean
fetchVoid:fetch_turtle_actualURL	clean:baseURI
clean:clean	owlreason:ttl
owlreason:reasonedRdf	prov2svg:prov
prov2svg:svg	provSVG

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Stian Soiland-Reyes

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Stian Soiland-Reyes

Information Attributions (0)

(Workflows/Files)

None

Information Tags (9)

Uploader tags

ontology
|
owl
|
pav
|
pellet
|
prov
|
provenance
|
provtoolbox
|
rdf
|
svg

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Information Featured In Packs (1)

Visualize PAV provenance as SVG

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

2661 viewings

1399 downloads

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Citations (0)

None

Version History

In chronological order:

Visualize PAV provenance as SVG

Created by Stian Soiland-Reyes on Tuesday 05 March 2013 23:36:36 (UTC)
Visualize PAV provenance as SVG

Created by Stian Soiland-Reyes on Friday 05 April 2013 09:11:36 (UTC)

Revision comment:

Updated to use PROVToolbox 0.1.3

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Stian Soiland-Reyes	Friday 05 April 2013 08:23:27 (UTC)
	Note that this workflow does not work on Windows as it uses command line tools like wget and unzip.

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