List Concept Sets

Created: 2012-07-06 14:25:52 Last updated: 2014-07-14 11:00:55

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The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

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Descriptions (1)

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Inputs (0)

Processors (5)

Name	Type	Description
listPredefinedConceptSets	wsdl	This is a get operation that returns a list of Concept Set names and IDs, and the IDs of the parent Concept Set. Wsdl http://ws.biosemantics.org/ConceptRecognizerService?wsdl Wsdl Operation listPredefinedConceptSets
listPredefinedConceptSets_output	xmlsplitter
listPredefinedConceptSets_return	xmlsplitter
return_ConceptSetInfoList	xmlsplitter
ConceptSetInfoList_ConceptSetInfoList	xmlsplitter

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Outputs (3)

Name	Description
Concept_set_ID	The IDs of the Concept Sets in the current database.
Concept_set_name	The names of the Concept Sets in the current database.
Concept_set_parent	The list of IDs for the parent Concept Sets for the Concept Sets in the current database.

Datalinks (7)

Source	Sink
listPredefinedConceptSets:parameters	listPredefinedConceptSets_output:input
listPredefinedConceptSets_output:return	listPredefinedConceptSets_return:input
listPredefinedConceptSets_return:ConceptSetInfoList	return_ConceptSetInfoList:input
return_ConceptSetInfoList:ConceptSetInfoList	ConceptSetInfoList_ConceptSetInfoList:input
ConceptSetInfoList_ConceptSetInfoList:id	Concept_set_ID
ConceptSetInfoList_ConceptSetInfoList:name	Concept_set_name
ConceptSetInfoList_ConceptSetInfoList:parent	Concept_set_parent

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Information Workflow Type

Taverna 2

Information Uploader

Kristina Hettne

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Information Version 1 (earliest) (of 3)

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Information Statistics

2575 viewings

1324 downloads

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Version History

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List Concept Sets

Created by Kristina Hettne on Friday 06 July 2012 14:25:51 (UTC)
List Concept Sets

Created by Kristina Hettne on Wednesday 18 July 2012 13:53:32 (UTC)

Revision comment:

Added annotations.
List Concept Sets

Created by Kristina Hettne on Monday 14 July 2014 11:00:55 (UTC)

Revision comment:

Edited Web service location and workflow description.

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

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Explain concept scores (7)

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

Created: 2012-02-07 | Last updated: 2014-07-14

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List Concept Sets

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