Get concept information

Created: 2012-07-06 14:20:40 Last updated: 2014-07-14 11:18:46

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The workflow takes a concept ID as input and returns the ID, definition and name of the concept.

This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
Concept_ID	Concept ID of the concept to retrieve name and definition for.

Processors (4)

Name	Type	Description
getConceptDefinition	wsdl	This service returns the concept CUI, name and definition. Wsdl http://ws.biosemantics.org/ConceptRecognizerService?wsdl Wsdl Operation getConceptDefinition
getConceptDefinition_input	xmlsplitter
getConceptDefinition_output	xmlsplitter
getConceptDefinition_return	xmlsplitter

Beanshells (0)

Outputs (3)

Name	Description
Concept_ID	The Concept ID.
Concept_definition	The definition of the concept.
Concept_name	The name of the concept.

Datalinks (7)

Source	Sink
getConceptDefinition_input:output	getConceptDefinition:parameters
Concept_ID	getConceptDefinition_input:conceptId
getConceptDefinition:parameters	getConceptDefinition_output:input
getConceptDefinition_output:return	getConceptDefinition_return:input
getConceptDefinition_return:conceptId	Concept_ID
getConceptDefinition_return:definition	Concept_definition
getConceptDefinition_return:name	Concept_name

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Kristina Hettne

Information License

All versions of this Workflow are licensed under:

Information Version 2 (of 5)

Information Credits (5)

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Information Attributions (0)

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Information Tags (3)

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Information Shared with Groups (3)

Information Featured In Packs (2)

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Information Attributed By (1)

(Workflows/Files)

Match concept to HPO profiles

Information Favourited By (0)

No one

Information Statistics

3664 viewings

1463 downloads

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Citations (0)

None

Version History

In chronological order:

Get concept information

Created by Kristina Hettne on Friday 06 July 2012 14:20:40 (UTC)
Get concept information

Created by Kristina Hettne on Wednesday 18 July 2012 13:55:32 (UTC)

Revision comment:

Added annotations.
Get concept information

Created by Kristina Hettne on Friday 14 September 2012 09:56:11 (UTC)
Get concept information

Created by Kristina Hettne on Tuesday 05 February 2013 20:44:31 (UTC)
Get concept information

Created by Kristina Hettne on Monday 14 July 2014 11:18:46 (UTC)

Revision comment:

Edited examples to reflect latest concept database update. Workflow now also return the profile in XML in order to avoid memory issues when splitting the list.

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Other workflows that use similar services (18)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

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Marco Roos

DatabaseID to ConceptID (7)

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

Credits: Marco Roos Martijn Schuemie Reinout van Schouwen BioSemantics

Taverna 2

Uploader

Reinout van Schouwen

Explain concept scores (7)

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

Created: 2012-02-07 | Last updated: 2014-07-14

Credits: Reinout van Schouwen

Get concept information

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Other workflows that use similar services (18)