Explain concept scores

Created: 2012-02-07 11:05:50 Last updated: 2014-07-14 09:41:34

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This workflow demonstrates the 'explain scores' functionality from Anni 2.1, made available as a web service.

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Workflow Components

Authors (0)

Titles (0)

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Dependencies (0)

Inputs (1)

Name	Description
Concept_IDs	List of 'Anni' concept ids

Processors (7)

Name	Type	Description
explainScores	wsdl	Wsdl http://ws.biosemantics.org/ConceptRecognizerService?wsdl Wsdl Operation explainScores
explainScores_input	xmlsplitter
cutoffValue	stringconstant	Value 100
explainScores_output	xmlsplitter
explainScores_return	xmlsplitter
return_ConceptContributionTable	xmlsplitter
ConceptContributionTable_ConceptContributionTable	xmlsplitter

Beanshells (0)

Outputs (3)

Name	Description
ConceptName
ConceptID
ConceptContribution

Datalinks (10)

Source	Sink
explainScores_input:output	explainScores:parameters
Concept_IDs	explainScores_input:conceptCUIs
cutoffValue:value	explainScores_input:cutoffValue
explainScores:parameters	explainScores_output:input
explainScores_output:return	explainScores_return:input
explainScores_return:ConceptContributionTable	return_ConceptContributionTable:input
return_ConceptContributionTable:ConceptContributionTable	ConceptContributionTable_ConceptContributionTable:input
ConceptContributionTable_ConceptContributionTable:conceptName	ConceptName
ConceptContributionTable_ConceptContributionTable:conceptId	ConceptID
ConceptContributionTable_ConceptContributionTable:contribution	ConceptContribution

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Information Workflow Type

Taverna 2

Information Uploader

Reinout van Schouwen

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Information Version 1 (earliest) (of 7)

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Reinout van Schouwen

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Information Shared with Groups (1)

BioSemantics

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Information Statistics

4806 viewings

1760 downloads

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Citations (0)

None

Version History

In chronological order:

explainScores demo

Created by Reinout van Schouwen on Tuesday 07 February 2012 11:05:50 (UTC)

Last edited by Reinout van Schouwen on Wednesday 21 March 2012 14:21:27 (UTC)
ExplainScores demo

Created by Reinout van Schouwen on Wednesday 21 March 2012 15:02:25 (UTC)

Last edited by Reinout van Schouwen on Wednesday 21 March 2012 15:10:04 (UTC)

Revision comment:

Use the 'explainScoresAsString' operation instead, which takes a comma separated string as parameter.
Explain concept scores

Created by Kristina Hettne on Tuesday 26 June 2012 12:52:31 (UTC)

Revision comment:

This revision is fully annotated and explains concept matching scores between two concept profiles.
Explain concept scores

Created by Kristina Hettne on Wednesday 18 July 2012 13:57:19 (UTC)

Revision comment:

Added annotations.
Explain concept scores

Created by Kristina Hettne on Friday 14 September 2012 10:01:37 (UTC)
Explain concept scores

Created by Kristina Hettne on Tuesday 05 February 2013 21:19:44 (UTC)
Explain concept scores

Created by Kristina Hettne on Monday 14 July 2014 09:41:34 (UTC)

Revision comment:

Updated examples to the latest concept database version.

Reviews (1)

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Peter 't Hoen

Title: Title

Rating: not yet rated

Created: 2013-03-21 09:02:08 | Updated: 2013-03-21 09:02:08

Should this not be called "Explain concept match scores"

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...