NCBI Gi to Kegg Pathway Descriptions

Value

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Value

Value

Script

import java.util.regex.*;

filteredlist = new ArrayList();
Pattern thePat = Pattern.compile(regex);
int theGroup = Integer.parseInt(group);

for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	Matcher matcher = thePat.matcher(item);

	if (matcher.find()) {
		filteredlist.add(matcher.group(theGroup));
	}
}

Value

Value

Script

import java.util.regex.*;

filteredlist = new ArrayList();
Pattern thePat = Pattern.compile(regex);
int theGroup = Integer.parseInt(group);

for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	Matcher matcher = thePat.matcher(item);

	if (matcher.find()) {
		filteredlist.add(matcher.group(theGroup));
	}
}

Value

Value

Script

String[] split;
Vector nonEmpty = new Vector();

if(input.indexOf("__cr____cn__") != -1) {
	split = input.split("__cr____cn__");
} else if(input.indexOf(",") != -1) {
	split = input.split(",");
} else {
	split = input.split("\n");	
}

for (int i = 0; i < split.length; i++) 
{		
	String trimmed = split[i].trim();
	nonEmpty.add(trimmed);	
}

String output = "";

for (int i = 0; i < nonEmpty.size(); i++)
{
	output = output + "ncbi-gi:" + (String) (nonEmpty.elementAt(i) + "\n");
}