EBI_CENSOR
Created: 2008-06-17 20:42:46
Last updated: 2008-06-25 06:16:03
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Workflow Components
Inputs (3)
| Name |
Description |
| Email |
User e-mail address. |
| Sequence_or_ID |
Input sequence. Either an actual sequence (fasta format recommended) or an entry identifier in database:identifier format (e.g. embl:AJ608703). |
| Repeat_library |
Library of complex repeats to search against (e.g. Fungi). |
Processors (11)
| Name |
Type |
Description |
| Unpack_alignment |
local |
Unpack the byte[] from the service into a string. |
| Contents_list |
local |
Wrap the input data in a list. |
| Job_params |
local |
Parameters structure for the job. |
| Input_data |
local |
Add type information to the input data. |
| Unpack_masked_sequence |
local |
Unpack the byte[] from the service into a string. |
| Unpack_table |
local |
Unpack the byte[] from the service into a string. |
| Get_table |
arbitrarywsdl |
Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/censor#poll_jobid_type) |
| Get_alignment |
arbitrarywsdl |
Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/censor#poll_jobid_type) |
| runCensor |
arbitrarywsdl |
Submit a CENSOR analysis job (see http://www.ebi.ac.uk/Tools/webservices/services/censor#runcensor_params_content) |
| EBI_CENSOR_poll_job |
workflow |
Check status of a WSCensor job. |
| Get_masked_sequence |
arbitrarywsdl |
Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/censor#poll_jobid_type) |
Beanshells (1)
| Name |
Description |
Inputs |
Outputs |
| Is_done |
Map the job status code into a true/false value. |
job_status
|
is_done
|
Outputs (4)
| Name |
Description |
| CENSOR_job_ID |
EBI job identifer for the job. |
| CENSOR_masked_sequence |
Repeat masked sequence in fasta format. |
| CENSOR_alignment |
Alignments of the repeat signature sequences with the masked regions. |
| CENSOR_table |
Table describing masked regions and identified repeats. |
Links (17)
| Source |
Sink |
| Contents_list:output |
runCensor:content |
| Email |
Job_params:email |
| Get_alignment:output |
Unpack_alignment:bytes |
| Get_masked_sequence:output |
Unpack_masked_sequence:bytes |
| Get_table:output |
Unpack_table:bytes |
| Input_data:output |
Contents_list:WSArrayofData |
| Job_params:output |
runCensor:params |
| Repeat_library |
Job_params:lib |
| Sequence_or_ID |
Input_data:content |
| Unpack_alignment:string |
CENSOR_alignment |
| Unpack_table:string |
CENSOR_table |
| runCensor:jobid |
EBI_CENSOR_poll_job:Job_ID |
| runCensor:jobid |
Get_alignment:jobid |
| runCensor:jobid |
Get_masked_sequence:jobid |
| runCensor:jobid |
Get_table:jobid |
| Unpack_masked_sequence:string |
CENSOR_masked_sequence |
| runCensor:jobid |
CENSOR_job_ID |
Coordinations (3)
| Controller |
Target |
| EBI_CENSOR_poll_job |
Get_masked_sequence |
| EBI_CENSOR_poll_job |
Get_alignment |
| EBI_CENSOR_poll_job |
Get_table |
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Version 2 (latest)
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EMBL-EBI Web Services (retired)
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