BLAST using DDBJ service

Created: 2007-10-03 18:36:06 Last updated: 2009-12-03 16:31:20

Download Workflow

Perform a sequence similarity search using the BLAsT algorithm through the DDBJ web service

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/23/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (3)

Name	Description
program
database
query_seq

Processors (1)

Name	Type	Description
blast_ddbj	arbitrarywsdl	Execute Blast

Beanshells (0)

Outputs (1)

Name	Description
text_blast_out

Links (4)

Source	Sink
database	blast_ddbj:database
program	blast_ddbj:program
query_seq	blast_ddbj:query
blast_ddbj:Result	text_blast_out

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 2)

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (5)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (6)

(Workflows/Files)

Information Favourited By (0)

No one

Information Statistics

7893 viewings

5618 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

BLAST using DDBJ service

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)
BLAST using DDBJ service

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)

Last edited by Paul Fisher on Thursday 03 December 2009 16:31:21 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (1)

View Timeline

Log in to make a comment

Liyinji	Saturday 21 August 2010 11:25:27 (UTC)
	this%20is%20my%20comment

Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Paul Fisher

BLASTP with simplified results returned (2)

Download

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSV...

Created: 2007-10-03 | Last updated: 2009-12-03

Taverna 1

Uploader

Katy Wolstencroft

Gene annotation pipeline for the Graves di... (2)

Download

This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.

Created: 2007-10-03 | Last updated: 2007-11-22

Credits: Katy Wolstencroft Peter Li