getUPIForSequence workflow

Created: 2008-06-06 09:59:59 Last updated: 2008-06-06 10:07:06

Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.

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Taverna 1

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Franck Tanoh

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picr workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)
getUPIForSequence workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)

Last edited by Franck Tanoh on Friday 06 June 2008 10:07:06 (UTC)

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Given a protein sequence get some information about it: Does this protein sequence occur in any of the protein databases (e.g. UniProtKB, PDB, etc.). Using the PICR web service (see http://www.ebi.ac.uk/Tools/picr/) map the sequence to a UniParc identifer. Which entries in the protein databases have this sequence. Using the UniParc database (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) a summary of the databases and the entries in those databases which have this s...

Created: 2008-06-08 | Last updated: 2008-06-08

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Attributions: EBI_dbfetch_UniParc EBI_Fetch_InterPro_Matches_UniParc EBI_PICR_Sequence_to_ID