getUPIForSequence workflow

Created: 2008-06-06 09:59:59 Last updated: 2008-06-06 10:07:06

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Information Workflow Type

Taverna 1

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Franck Tanoh

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Information Version 1 (earliest) (of 2)

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Franck Tanoh

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Version History

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picr workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)
getUPIForSequence workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)

Last edited by Franck Tanoh on Friday 06 June 2008 10:07:06 (UTC)

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Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.

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EBI_PICR_Sequence_to_UniParc_and_InterPro (2)

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Given a protein sequence get some information about it: Does this protein sequence occur in any of the protein databases (e.g. UniProtKB, PDB, etc.). Using the PICR web service (see http://www.ebi.ac.uk/Tools/picr/) map the sequence to a UniParc identifer. Which entries in the protein databases have this sequence. Using the UniParc database (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) a summary of the databases and the entries in those databases which have this s...

Created: 2008-06-08 | Last updated: 2008-06-08

Credits: Hamish McWilliam

Attributions: EBI_dbfetch_UniParc EBI_Fetch_InterPro_Matches_UniParc EBI_PICR_Sequence_to_ID