BLASTP with simplified results returned

Created: 2007-10-03 18:36:06 Last updated: 2009-12-03 16:28:50

Download Workflow

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Example input for this service are given below.

query:

>MySequence

program:

blastp

database: DDBJ

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/21/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (3)

Name	Description
database
program
query

Processors (4)

Name	Type	Description
species_filter	stringconstant
chromosome_filter	stringconstant
blast_ddbj	arbitrarywsdl
blastfilecomparer	soaplabwsdl	Compares a new BLAST file output with an older BLAST file output to check for new hits

Beanshells (0)

Outputs (2)

Name	Description
blast_output
compared_output

Links (8)

Source	Sink
blast_ddbj:Result	blastfilecomparer:blastResult_direct_data
database	blast_ddbj:database
program	blast_ddbj:program
query	blast_ddbj:query
blast_ddbj:Result	blast_output
blastfilecomparer:output	compared_output
chromosome_filter:value	blastfilecomparer:chromo
species_filter:value	blastfilecomparer:species

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (6)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

4742 viewings

3459 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

BLASTP with simplified results returned

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)
BLASTP with simplified results returned

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)

Last edited by Paul Fisher on Thursday 03 December 2009 16:28:51 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Paul Fisher

BLAST using DDBJ service (2)

Download

Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03

Taverna 1

Uploader

Katy Wolstencroft

Gene annotation pipeline for the Graves di... (2)

Download

This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.

Created: 2007-10-03 | Last updated: 2007-11-22

Credits: Katy Wolstencroft Peter Li