BLASTP with simplified results returned

Created: 2007-10-03 18:36:06 Last updated: 2009-12-03 16:28:50

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Example input for this service are given below.

query:

>MySequence

program:

blastp

database: DDBJ

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Workflow Components

Inputs (3)

Name	Description
database
program
query

Processors (4)

Name	Type	Description
species_filter	stringconstant
chromosome_filter	stringconstant
blast_ddbj	arbitrarywsdl
blastfilecomparer	soaplabwsdl	Compares a new BLAST file output with an older BLAST file output to check for new hits

Beanshells (0)

Outputs (2)

Name	Description
blast_output
compared_output

Links (8)

Source	Sink
blast_ddbj:Result	blastfilecomparer:blastResult_direct_data
database	blast_ddbj:database
program	blast_ddbj:program
query	blast_ddbj:query
blast_ddbj:Result	blast_output
blastfilecomparer:output	compared_output
chromosome_filter:value	blastfilecomparer:chromo
species_filter:value	blastfilecomparer:species

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Taverna 1

Information Uploader

Paul Fisher

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Information Version 2 (latest) (of 2)

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4741 viewings

3459 downloads

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Version History

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BLASTP with simplified results returned

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)
BLASTP with simplified results returned

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)

Last edited by Paul Fisher on Thursday 03 December 2009 16:28:51 (UTC)

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