EBI WU-BLAST with program and database selection prompts.

Created: 2009-07-04 11:39:54 Last updated: 2010-12-06 10:56:44

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Run a BLAST analysis using the EBI's WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). This workflow wraps the EBI_WU-BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default.

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Workflow Components

Inputs (0)

Processors (7)

Name	Type	Description
Ask_for_sequence	local	Ask for the input sequence (fasta format recommended) or a sequence Id in "database:id" format (e.g. uniprot:wap_rat).
Make_database_list	local	A list of database names to use in a select.
Select_program	local	Select the BLAST program to use for the search.
Select_database	local	Select the database to search.
Ask_for_email	local	Ask for the user's e-mail address.
Make_program_list	local	A liast or program names to use in the select.
EBI_WU_BLAST	workflow	Run a BLAST analysis using the EBI's WU-BLAST service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast).

Beanshells (1)

Name	Description	Inputs	Outputs
Is_Done		job_status	is_done

Outputs (1)

Name	Description
BLAST Report	Output report of the BLAST analysis.

Links (7)

Source	Sink
Ask_for_email:answer	EBI_WU_BLAST:E-mail Address
Ask_for_sequence:answer	EBI_WU_BLAST:Sequence or ID
Make_database_list:split	Select_database:valueList
Make_program_list:split	Select_program:valueList
Select_database:answer	EBI_WU_BLAST:Search Database
Select_program:answer	EBI_WU_BLAST:BLAST Program
EBI_WU_BLAST:Text Result	BLAST Report

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Taverna 1

Information Uploader

Hamish McWilliam

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Information Version 2 (of 3)

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Hamish McWilliam

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EBI_WU-BLAST

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Information Statistics

4964 viewings

2824 downloads

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Version History

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EBI WU-BLAST with prompt

Created by Hamish McWilliam on Friday 30 May 2008 22:56:49 (UTC)

Last edited by Hamish McWilliam on Friday 30 May 2008 22:56:50 (UTC)
EBI WU-BLAST with prompt

Created by Hamish McWilliam on Friday 30 May 2008 22:56:49 (UTC)

Last edited by Hamish McWilliam on Monday 02 June 2008 21:30:43 (UTC)

Revision comment:

Add description in workflow.
EBI WU-BLAST with program and database selection prompts.

Created by Hamish McWilliam on Saturday 04 July 2009 11:39:54 (UTC)

Last edited by Hamish McWilliam on Monday 06 December 2010 10:56:44 (UTC)

Revision comment:

Update to obtain values for selection menus from the service's meta-data oprtations. This means that the list of available programs and databases will be insync with those supported by the service.

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EBI_WU-BLAST (1)

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Perform a BLAST search using the EBI's WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). The default parameters search UniProtKB using blastp. To change the job parameters see Job_params. Note: the WSWUBlast service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement WU-BLAST services (REST or SOAP) should be used instead.

Created: 2008-05-30 | Last updated: 2010-12-06

Credits: Hamish McWilliam