InterproScan without Looping

Created: 2011-03-16 14:01:22 Last updated: 2012-08-29 08:30:44

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. This workflow will not work properly until we add looping.

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Workflow Components

Authors (1)

Titles (2)

Descriptions (3)

Dependencies (0)

Inputs (2)

Name	Description
sequence	a protein sequence in Fasta format
email	Your email address

Processors (13)

Name	Type	Description
run	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation run
run_input	xmlsplitter
run_input_2	xmlsplitter
run_output	xmlsplitter
Status	workflow
getResult	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_graphic	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_input	xmlsplitter
getResult_graphic_input	xmlsplitter
getResult_output	xmlsplitter
getResult_graphic_output	xmlsplitter
text	stringconstant	Value txt
visual_png	stringconstant	Value visual-png

Beanshells (0)

Outputs (3)

Name	Description
status_output
TextResults
Graphical_output

Datalinks (17)

Source	Sink
run_input:output	run:parameters
run_input_2:output	run_input:parameters
email	run_input:email
sequence	run_input_2:sequence
run:parameters	run_output:input
run_output:jobId	Status:JobID
getResult_input:output	getResult:parameters
getResult_graphic_input:output	getResult_graphic:parameters
run_output:jobId	getResult_input:jobId
text:value	getResult_input:type
run_output:jobId	getResult_graphic_input:jobId
visual_png:value	getResult_graphic_input:type
getResult:parameters	getResult_output:input
getResult_graphic:parameters	getResult_graphic_output:input
Status:getStatus_output_status	status_output
getResult_output:output	TextResults
getResult_graphic_output:output	Graphical_output

Coordinations (1)

Controller	Target
Status	getResult_input

Information Workflow Type

Taverna 2

Information Uploader

Katy Wolstencroft

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Katy Wolstencroft

Information Attributions (0)

(Workflows/Files)

None

Information Tags (9)

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Information Shared with Groups (5)

Information Featured In Packs (1)

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

1656 viewings

1436 downloads

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Citations (0)

None

Version History

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InterproScan without Looping

Created by Katy Wolstencroft on Wednesday 16 March 2011 14:01:22 (UTC)

Last edited by Katy Wolstencroft on Wednesday 29 August 2012 08:30:43 (UTC)

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Christian

The services in this workflow have been changed.

Please use the workflow:

http://www.myexperiment.org/workflows/4331.html

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Matthieu

Drug Repurposing Targets (1)

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No description

Created: 2011-04-01 | Last updated: 2011-04-01

Credits: Matthieu Alexncl Kristiangardner123 Paulshreeve Matt Collison

Taverna 2

Uploader

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EBI_InterproScan_NewServices (2)

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This workflow performs an interproscan on provided sequencesThis workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2011-01-17 | Last updated: 2011-01-17

Credits: Katy Wolstencroft Hamish McWilliam Stian Soiland-Reyes

Attributions: EBI_InterProScan for Taverna 2 EBI_InterProScan for Taverna 2 EBI_InterProScan

InterproScan without Looping

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Workflow Components

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Value

Value

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Comments (1)

Other workflows that use similar services (8)