Source |
Sink |
Get_Pathways:pathway_desc |
merge_pathway_desc:stringlist |
Get_Pathways:pathway_genes |
merge_genes_and_pathways:stringlist |
Get_Pathways:pathway_ids |
merge_pathway_ids_1:stringlist |
Kegg_gene_ids:return |
concat_kegg_genes:string1 |
Kegg_gene_ids_2:return |
concat_kegg_genes:string2 |
REMOVE_NULLS_2:output |
add_uniprot_to_string:input |
add_ncbi_to_string:output |
Kegg_gene_ids_2:string |
add_uniprot_to_string:output |
Kegg_gene_ids:string |
concat_kegg_genes:output |
split_gene_ids:input |
create_report:result |
merge_reports:stringlist |
gene_descriptions:return |
merge_gene_desc:stringlist |
kegg_pathway_release:value |
binfo:db |
merge_entrez_genes:concatenated |
remove_Nulls:input |
merge_gene_desc:concatenated |
remove_description_nulls:input |
merge_genes_and_pathways:concatenated |
merge_genes_pathways_2:stringlist |
merge_genes_pathways_2:concatenated |
merge_genes_pathways_3:stringlist |
merge_pathway_desc:concatenated |
remove_pathway_nulls:input |
merge_pathway_ids_1:concatenated |
remove_pathway_duplicates:stringlist |
merge_uniprot_ids:concatenated |
REMOVE_NULLS_2:input |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.chromosome_name |
create_report:chromoName |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.end_position |
create_report:geneEnd |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.ensembl_gene_id |
create_report:ensemblGeneId |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.ensembl_transcript_id |
create_report:ensemblTranscriptId |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.entrezgene |
create_report:entrezGeneId |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.entrezgene |
remove_entrez_duplicates:stringlist |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.uniprot_swissprot_accession |
create_report:uniprotAcc |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.uniprot_swissprot_accession |
remove_uniprot_duplicates:stringlist |
probeset_list |
split_probesets:string |
regex_2:value |
split_for_duplicates:regex |
regex_2:value |
split_probesets:regex |
remove_Nulls:output |
add_ncbi_to_string:input |
remove_duplicate_kegg_genes:strippedlist |
Get_Pathways:gene_ids |
remove_duplicate_kegg_genes:strippedlist |
gene_descriptions:string |
split_gene_ids:output |
split_for_duplicates:string |
binfo:return |
kegg_pathway_release |
getcurrentdatabase:output |
ensembl_database_release |
merge_genes_pathways_3:concatenated |
merged_pathways |
merge_pathway_ids_2:concatenated |
pathway_list |
merge_reports:concatenated |
report |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.external_gene_id |
create_report:externalGeneId |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.start_position |
create_report:geneStart |
remove_description_nulls:output |
gene_descriptions |
remove_entrez_duplicates:strippedlist |
merge_entrez_genes:stringlist |
remove_pathway_duplicates:strippedlist |
merge_pathway_ids_2:stringlist |
remove_pathway_nulls:output |
pathway_descriptions |
remove_uniprot_duplicates:strippedlist |
merge_uniprot_ids:stringlist |
species:value |
getcurrentdatabase:species |
split_for_duplicates:split |
remove_duplicate_kegg_genes:stringlist |
split_probesets:split |
mmusculus_gene_ensembl:mmusculus_gene_ensembl.affy_mouse430_2_filter |
Comments (1)
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Do you have some example inputs for running this workflow..?