GBSeq test

Created: 2008-03-05 14:15:35 Last updated: 2008-03-31 15:55:09

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This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

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Workflow Components

Inputs (0)

Processors (10)

Name	Type	Description
protein_id	stringconstant
Get_Nucleotide_GBSeq_XML	local
nuc_id	stringconstant
Get_Nucleotide_TinySeq_XML	local
Get_Protein_FASTA	local
Get_Protein_GBSeq_XML	local
Get_Nucleotide_FASTA	local
Get_Protein_INSDSeq_XML	local
Get_Nucleotide_INSDSeq_XML	local
Get_Protein_TinySeq_XML	local

Beanshells (0)

Outputs (8)

Name	Description
protein_xml
nuc_xml
nuc_tiny
nuc_fasta
prot_fasta
prot_insd
nuc_insd
prot_tiny

Links (16)

Source	Sink
Get_Nucleotide_FASTA:outputText	nuc_fasta
Get_Nucleotide_INSDSeq_XML:outputText	nuc_insd
Get_Protein_FASTA:outputText	prot_fasta
Get_Protein_INSDSeq_XML:outputText	prot_insd
Get_Protein_TinySeq_XML:outputText	prot_tiny
nuc_id:value	Get_Nucleotide_FASTA:id
nuc_id:value	Get_Nucleotide_INSDSeq_XML:id
protein_id:value	Get_Protein_FASTA:id
protein_id:value	Get_Protein_INSDSeq_XML:id
protein_id:value	Get_Protein_TinySeq_XML:id
Get_Nucleotide_GBSeq_XML:outputText	nuc_xml
Get_Nucleotide_TinySeq_XML:outputText	nuc_tiny
nuc_id:value	Get_Nucleotide_TinySeq_XML:id
Get_Protein_GBSeq_XML:outputText	protein_xml
nuc_id:value	Get_Nucleotide_GBSeq_XML:id
protein_id:value	Get_Protein_GBSeq_XML:id

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Information Workflow Type

Taverna 1

Information Uploader

Alan Williams

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Franck Tanoh

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None

Information Tags (9)

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Information Shared with Groups (1)

Taverna 1.7.1 workflow workbench examples

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Information Attributed By (1)

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GBSeq test

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Information Statistics

4409 viewings

3178 downloads

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Citations (0)

None

Version History

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GBSeq test

Created by Alan Williams on Wednesday 05 March 2008 14:15:35 (UTC)

Last edited by Alan Williams on Thursday 20 March 2008 09:52:32 (UTC)
GBSeq test

Created by Alan Williams on Wednesday 05 March 2008 14:15:35 (UTC)

Last edited by Alan Williams on Monday 31 March 2008 15:55:09 (UTC)

Revision comment:

This version contains a description

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