retrieve protein sequence and do a BLAST from DDBJ Web services

Created: 2010-09-01 17:22:14 Last updated: 2010-09-01 17:22:37

Download Workflow

informations on Web services available at http://xml.nig.ac.jp/index.html

example

accession : Q9NRA8
database : UNIPROT
program : blastp

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/1492/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (3)

Name	Description
UniProt_accession
biological_sequence_database
bioinformatics_program

Processors (2)

Name	Type	Description
getFASTA_UNIPROTEntry	arbitrarywsdl	Get UNIPROT entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	Execute Blast

Beanshells (0)

Outputs (1)

Name	Description
blast_report_ddbj

Links (5)

Source	Sink
UniProt_accession	getFASTA_UNIPROTEntry:accession
searchSimple:Result	blast_report_ddbj
getFASTA_UNIPROTEntry:Result	searchSimple:query
biological_sequence_database	searchSimple:database
bioinformatics_program	searchSimple:program

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Lebreton

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Lebreton

Information Attributions (1)

(Workflows/Files)

retrieve protein sequence and do a BLAST and extract position from DDBJ Web services

Information Tags (6)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1941 viewings

1792 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

retrieve protein sequence and do a BLAST from DDBJ Web services

Created by Lebreton on Wednesday 01 September 2010 17:22:14 (UTC)

Last edited by Lebreton on Wednesday 01 September 2010 17:22:37 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (51)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Lebreton

retrieve protein sequence and do a BLAST a... (1)

Download

retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

Taverna 1

Uploader

Lebreton

retrieve nucleotide sequence and do a BLAS... (1)

Download

retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services